RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 OR6C75A6NL08 312 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 ACKR2O00590 384 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 SYN3O14994 580 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 CCNT1O60563 726 aaKnown RBP4.14□□□□□ -1.75
SCFD1-216ENST00000555550 SOCS5O75159 536 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 DDNO94850 711 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-216ENST00000555550 HLA-DQA2P01906 255 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 ARSBP15848 533 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 TNFSF8P32971 234 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 CDK7P50613 346 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 RASSF2P50749 326 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 GALNT1Q10472 559 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-216ENST00000555550 PDCLQ13371 301 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 GXYLT1Q4G148 440 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 TTC22Q5TAA0 569 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 DCAF12L2Q5VW00 463 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 MTFR2Q6P444 385 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 PRSS57Q6UWY2 283 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 RNF144BQ7Z419 303 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 VPS37AQ8NEZ2 397 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 SLC2A12Q8TD20 617 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 IFT27Q9BW83 186 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 DCLK3Q9C098 648 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 CLPBQ9H078 707 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 ZNF700Q9H0M5 742 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 PLCB1Q9NQ66 1216 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 PRDM8Q9NQV8 689 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 CDH22Q9UJ99 828 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 FZD10Q9ULW2 581 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 DAAM1Q9Y4D1 1078 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 PCDHGB1Q9Y5G3 927 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 PTGDR2Q9Y5Y4 395 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 BECN2A8MW95 431 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 STMND1H3BQB6 276 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 HNRNPRO43390 633 aaKnown RBP4.13□□□□□ -1.75
SCFD1-216ENST00000555550 CSTBP04080 98 aaKnown RBP4.13□□□□□ -1.75
SCFD1-216ENST00000555550 CHRNB2P17787 502 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 TYK2P29597 1187 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 HTR3AP46098 478 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 PCYT1AP49585 367 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 BLMHQ13867 455 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 PLK5Q496M5 336 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 CCDC38Q502W7 563 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 DGAT2L7PQ6IED9 249 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 HORMAD2Q8N7B1 307 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 ENGASEQ8NFI3 743 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 POF1BQ8WVV4 589 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 RUBCNQ92622 972 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 URB1-AS1Q96HZ7 61 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 NPAS1Q99742 590 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 WDR77Q9BQA1 342 aaPredicted RBP4.13□□□□□ -1.75
SCFD1-216ENST00000555550 SEZ6LQ9BYH1 1024 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 FRMD8Q9BZ67 464 aaPredicted RBP4.13□□□□□ -1.75
SCFD1-216ENST00000555550 C6orf106Q9H6K1 298 aaPredicted RBP4.13□□□□□ -1.75
SCFD1-216ENST00000555550 CATSPERBQ9H7T0 1116 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 ACAD9Q9H845 621 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 Q9N2J8 555 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 TMLHEQ9NVH6 421 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 KCND3Q9UK17 655 aa4.13□□□□□ -1.75
SCFD1-216ENST00000555550 A0A1B0GVT2 93 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 TMEM247A6NEH6 219 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 NPIPB13A6NJU9 1138 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 NPIPB5A8MRT5 1133 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 NPIPB4C9JG80 1138 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 INAFM1C9JVW0 142 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 SPRY3O43610 288 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 LIASO43766 372 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 TMCC1O94876 653 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 CGAP01215 116 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 HOXC6P09630 235 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 FCGR2AP12318 317 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 HOXD3P31249 432 aaPredicted RBP4.12□□□□□ -1.75
SCFD1-216ENST00000555550 PDLIM4P50479 330 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 KRTAP10-12P60413 245 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 TIGD6Q17RP2 521 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 LRRC24Q50LG9 513 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 DNTTIP2Q5QJE6 756 aaKnown RBP4.12□□□□□ -1.75
SCFD1-216ENST00000555550 FNBP1LQ5T0N5 605 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 LIN54Q6MZP7 749 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 NOL8Q76FK4 1167 aaKnown RBP4.12□□□□□ -1.75
SCFD1-216ENST00000555550 PALB2Q86YC2 1186 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 PRR26Q8N8Z3 221 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 FSIP1Q8NA03 581 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 GOLGA1Q92805 767 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 CADM1Q9BY67 442 aaKnown RBP4.12□□□□□ -1.75
SCFD1-216ENST00000555550 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.12□□□□□ -1.75
SCFD1-216ENST00000555550 TAF1DQ9H5J8 278 aaPredicted RBP4.12□□□□□ -1.75
SCFD1-216ENST00000555550 TMEM248Q9NWD8 314 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 RCE1Q9Y256 329 aa4.12□□□□□ -1.75
SCFD1-216ENST00000555550 MS4A18H0YCH9 400 aa4.11□□□□□ -1.75
SCFD1-216ENST00000555550 RGS14O43566 566 aa4.11□□□□□ -1.75
SCFD1-216ENST00000555550 LDB3O75112 727 aa4.11□□□□□ -1.75
SCFD1-216ENST00000555550 KRT38O76015 456 aa4.11□□□□□ -1.75
SCFD1-216ENST00000555550 LYL1P12980 280 aa4.11□□□□□ -1.75
SCFD1-216ENST00000555550 CYP4B1P13584 511 aa4.11□□□□□ -1.75
SCFD1-216ENST00000555550 TCEA1P23193 301 aaKnown RBP4.11□□□□□ -1.75
SCFD1-216ENST00000555550 AVPR1AP37288 418 aa4.11□□□□□ -1.75
SCFD1-216ENST00000555550 PNLIPRP1P54315 467 aa4.11□□□□□ -1.75
SCFD1-216ENST00000555550 SELENOVP59797 346 aa4.11□□□□□ -1.75
SCFD1-216ENST00000555550 ERVFC1-1P60608 527 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms