RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 STK40Q8N2I9 435 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 SLC25A45Q8N413 288 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 KCNE4Q8WWG9 221 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 KLHDC7BQ96G42 594 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 PRICKLE1Q96MT3 831 aaPredicted RBP12.15□□□□□ -0.46
SRP54-203ENST00000553544 NOX5Q96PH1 765 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 DEPDC7Q96QD5 511 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 STK33Q9BYT3 514 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 ABCG4Q9H172 646 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 NUCKS1Q9H1E3 243 aaKnown RBP12.15□□□□□ -0.46
SRP54-203ENST00000553544 VPS16Q9H269 839 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 GANQ9H2C0 597 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 ANO10Q9NW15 660 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 XPO7Q9UIA9 1087 aaKnown RBP12.15□□□□□ -0.46
SRP54-203ENST00000553544 PCDHB1Q9Y5F3 818 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 TP53BP1Q12888 1972 aaPredicted RBP12.15□□□□□ -0.46
SRP54-203ENST00000553544 PIEZO2Q9H5I5 2752 aa12.15□□□□□ -0.46
SRP54-203ENST00000553544 DOCK4Q8N1I0 1966 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 MYLKQ15746 1914 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 KCNU1A8MYU2 1149 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 PRAMEF26H0Y7S4 382 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 PES1O00541 588 aaKnown RBP12.14□□□□□ -0.47
SRP54-203ENST00000553544 OPA1O60313 960 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 HSF2BPO75031 334 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 SDC3O75056 442 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 WISP1O95388 367 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 ERBB2P04626 1255 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 DGKAP23743 735 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 MAT2AP31153 395 aaKnown RBP12.14□□□□□ -0.47
SRP54-203ENST00000553544 CTSOP43234 321 aaPredicted RBP12.14□□□□□ -0.47
SRP54-203ENST00000553544 RPS24P62847 133 aaKnown RBP12.14□□□□□ -0.47
SRP54-203ENST00000553544 GABREP78334 506 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 SLC6A3Q01959 620 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 RAPGEF1Q13905 1077 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 ELAVL3Q14576 367 aaKnown RBP12.14□□□□□ -0.47
SRP54-203ENST00000553544 NCAPHQ15003 741 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 DCAF6Q58WW2 860 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 ZC3H12AQ5D1E8 599 aaKnown RBP12.14□□□□□ -0.47
SRP54-203ENST00000553544 FSCBQ5H9T9 825 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 MS4A13Q5J8X5 152 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 PITRM1Q5JRX3 1037 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 CDCP2Q5VXM1 449 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 SASS6Q6UVJ0 657 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 SLC26A9Q7LBE3 791 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 DEFB106AQ8N104 65 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 ZNF397Q8NF99 534 aaPredicted RBP12.14□□□□□ -0.47
SRP54-203ENST00000553544 SNRNP27Q8WVK2 155 aaKnown RBP12.14□□□□□ -0.47
SRP54-203ENST00000553544 PTPRN2Q92932 1015 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 MED8Q96G25 268 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 SEMA4CQ9C0C4 833 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 POLR1BQ9H9Y6 1135 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 THSD1Q9NS62 852 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 KLHL11Q9NVR0 708 aa12.14□□□□□ -0.47
SRP54-203ENST00000553544 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.14□□□□□ -0.47
SRP54-203ENST00000553544 ITIH6Q6UXX5 1313 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 F8VZ95 297 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 SLC7A4O43246 635 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 SLC28A2O43868 658 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 RNGTTO60942 597 aaKnown RBP12.13□□□□□ -0.47
SRP54-203ENST00000553544 ABCB7O75027 752 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 RTN2O75298 545 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 CKMT1AP12532 417 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 ZNF18P17022 549 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 MZF1P28698 734 aaPredicted RBP12.13□□□□□ -0.47
SRP54-203ENST00000553544 GABRB2P47870 512 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 SNX16P57768 344 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 PPP2CBP62714 309 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 PPP2CAP67775 309 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 CDK17Q00537 523 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 STX1AQ16623 288 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 SETMARQ53H47 684 aaPredicted RBP12.13□□□□□ -0.47
SRP54-203ENST00000553544 CCDC183Q5T5S1 534 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 FAM46CQ5VWP2 391 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 OR6B2Q6IFH4 312 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 MMS22LQ6ZRQ5 1243 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 APTXQ7Z2E3 356 aaKnown RBP12.13□□□□□ -0.47
SRP54-203ENST00000553544 TMC6Q7Z403 805 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 DSG4Q86SJ6 1040 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 NOP9Q86U38 636 aaKnown RBP12.13□□□□□ -0.47
SRP54-203ENST00000553544 ZDHHC17Q8IUH5 632 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 CFAP52Q8N1V2 620 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 TMEM35BQ8NCS4 154 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 OR4C6Q8NH72 309 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 EPS8L1Q8TE68 723 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 TTC9Q92623 222 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 CCDC97Q96F63 343 aaPredicted RBP12.13□□□□□ -0.47
SRP54-203ENST00000553544 BTN2A3PQ96KV6 586 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 RPL10LQ96L21 214 aaKnown RBP12.13□□□□□ -0.47
SRP54-203ENST00000553544 PRMT1Q99873 361 aaKnown RBP12.13□□□□□ -0.47
SRP54-203ENST00000553544 OSBPL2Q9H1P3 480 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 HSD3B7Q9H2F3 369 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 TMEM63CQ9P1W3 806 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 LIMA1Q9UHB6 759 aaKnown RBP12.13□□□□□ -0.47
SRP54-203ENST00000553544 SIK3Q9Y2K2 1263 aa12.13□□□□□ -0.47
SRP54-203ENST00000553544 NEMP2A6NFY4 417 aa12.12□□□□□ -0.47
SRP54-203ENST00000553544 EPHB6O15197 1021 aa12.12□□□□□ -0.47
SRP54-203ENST00000553544 PLRG1O43660 514 aaKnown RBP12.12□□□□□ -0.47
SRP54-203ENST00000553544 CSO75390 466 aaKnown RBP12.12□□□□□ -0.47
SRP54-203ENST00000553544 GRAP2O75791 330 aa12.12□□□□□ -0.47
SRP54-203ENST00000553544 LUC7L3O95232 432 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms