RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 NR0B2Q15466 257 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 TMEM259Q4ZIN3 620 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 SYPL2Q5VXT5 272 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 VASH2Q86V25 355 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 SLC35F3Q8IY50 421 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 UBR7Q8N806 425 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 LMX1AQ8TE12 382 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 HTR3CQ8WXA8 447 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 FAXDC2Q96IV6 333 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 SERPINB11Q96P15 392 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 SEMA3CQ99985 751 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 CCDC3Q9BQI4 270 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 TCEAL2Q9H3H9 227 aaPredicted RBP13.26□□□□□ -0.29
VPS29-211ENST00000553128 ZSCAN16Q9H4T2 348 aaPredicted RBP13.26□□□□□ -0.29
VPS29-211ENST00000553128 SYNDIG1Q9H7V2 258 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 FOXD4L1Q9NU39 408 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 EVA1BQ9NVM1 165 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 PNMA8BQ9ULN7 279 aaPredicted RBP13.26□□□□□ -0.29
VPS29-211ENST00000553128 MAPK8IP1Q9UQF2 711 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 SPTY2D1-AS1A0A0U1RR47 76 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 A6NNZ2 444 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 KPNA3O00505 521 aaPredicted RBP13.25□□□□□ -0.29
VPS29-211ENST00000553128 PLD2O14939 933 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 ALOX15BO15296 676 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 GCATO75600 419 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 PCDH8O95206 1070 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 MT-CO1P00395 513 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 VDRP11473 427 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 GTF2H1P32780 548 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 UGT1A5P35504 534 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 PSMC2P35998 433 aaKnown RBP13.25□□□□□ -0.29
VPS29-211ENST00000553128 MLLT3P42568 568 aaPredicted RBP13.25□□□□□ -0.29
VPS29-211ENST00000553128 MCCD1P59942 119 aaPredicted RBP13.25□□□□□ -0.29
VPS29-211ENST00000553128 CENPCQ03188 943 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 SULT2A1Q06520 285 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 CUL2Q13617 745 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 SLC12A1Q13621 1099 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 IGFBP7Q16270 282 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 NFIL3Q16649 462 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 CBWD6Q4V339 395 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 CBWD3Q5JTY5 395 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 CBWD5Q5RIA9 395 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 RESP18Q5W5W9 173 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 HIST2H2BCQ6DN03 193 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 NEK5Q6P3R8 708 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 LCLAT1Q6UWP7 414 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 XKR5Q6UX68 686 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 C14orf80Q86SX3 495 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 PARGQ86W56 976 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 PTRH1Q86Y79 214 aaKnown RBP13.25□□□□□ -0.29
VPS29-211ENST00000553128 JAMLQ86YT9 394 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 RBFAQ8N0V3 343 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 SH2D3CQ8N5H7 860 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 CHST14Q8NCH0 376 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 TPCN2Q8NHX9 752 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 ERCC4Q92889 916 aaPredicted RBP13.25□□□□□ -0.29
VPS29-211ENST00000553128 PPP1R13BQ96KQ4 1090 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 PRMT1Q99873 361 aaKnown RBP13.25□□□□□ -0.29
VPS29-211ENST00000553128 BOCQ9BWV1 1114 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 FOXP3Q9BZS1 431 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 EPN3Q9H201 632 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 RABGEF1Q9UJ41 708 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 SALL4Q9UJQ4 1053 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 PCDHGA4Q9Y5G9 962 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 CSNK1G3Q9Y6M4 447 aa13.25□□□□□ -0.29
VPS29-211ENST00000553128 USP9YO00507 2555 aaPredicted RBP13.24□□□□□ -0.29
VPS29-211ENST00000553128 CLEC18AA5D8T8 446 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 K7ERQ8 282 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 M0QYV0 167 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 AGRPO00253 132 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 NTN3O00634 580 aaPredicted RBP13.24□□□□□ -0.29
VPS29-211ENST00000553128 YEATS4O95619 227 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 PAK4O96013 591 aaPredicted RBP13.24□□□□□ -0.29
VPS29-211ENST00000553128 JUNDP17535 347 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 VASPP50552 380 aaPredicted RBP13.24□□□□□ -0.29
VPS29-211ENST00000553128 ENPEPQ07075 957 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 EIF2B5Q13144 721 aaKnown RBP13.24□□□□□ -0.29
VPS29-211ENST00000553128 NNTQ13423 1086 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 C1orf61Q13536 156 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 SPIDRQ14159 915 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 SKIDA1Q1XH10 827 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 FOXD4L6Q3SYB3 417 aaPredicted RBP13.24□□□□□ -0.29
VPS29-211ENST00000553128 CLEC18BQ6UXF7 455 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 FOXD4L3Q6VB84 417 aaPredicted RBP13.24□□□□□ -0.29
VPS29-211ENST00000553128 KYAT3Q6YP21 454 aaKnown RBP13.24□□□□□ -0.29
VPS29-211ENST00000553128 FBXO39Q8N4B4 442 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 CLEC18CQ8NCF0 446 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 OR2A12Q8NGT7 310 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 LIN37Q96GY3 246 aaPredicted RBP13.24□□□□□ -0.29
VPS29-211ENST00000553128 FEM1AQ9BSK4 669 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 SLC25A18Q9H1K4 315 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 EPB41L5Q9HCM4 733 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 SLC25A13Q9UJS0 675 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 PCDHA7Q9UN72 937 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 PCDHGA7Q9Y5G6 932 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 OR51B4Q9Y5P0 310 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 HS3ST3A1Q9Y663 406 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 MYO9AB2RTY4 2548 aa13.24□□□□□ -0.29
VPS29-211ENST00000553128 F5H5T6 163 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 RNF225M0QZC1 329 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms