RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ARL2P36404 184 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 POLR2IP36954 125 aaKnown RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 AVPR1AP37288 418 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 NAGLUP54802 743 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 SH3BGRP55822 239 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 FKBP1AP62942 108 aaKnown RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 NSUN2Q08J23 767 aaKnown RBP eCLIP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 CYP2A13Q16696 494 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 PPP1R3AQ16821 1122 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 GPR107Q5VW38 600 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 STEAP4Q687X5 459 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 MAMDC4Q6UXC1 1216 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 TMEM26Q6ZUK4 368 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 CHSY3Q70JA7 882 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 PIGZQ86VD9 579 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 OFCC1Q8IZS5 231 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 LRRC43Q8N309 656 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 MCUQ8NE86 351 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 TTC16Q8NEE8 873 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 TBC1D15Q8TC07 691 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 DDI1Q8WTU0 396 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 LZICQ8WZA0 190 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 COG8Q96MW5 612 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 OMDQ99983 421 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 SMOXQ9NWM0 555 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 TRNAU1APQ9NX07 287 aaKnown RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 DCDC2Q9UHG0 476 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 ZNHIT2Q9UHR6 403 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 COQ6Q9Y2Z9 468 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 FIS1Q9Y3D6 152 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 TNS1Q9HBL0 1735 aaKnown RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 SAC3D1A6NKF1 404 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 C9JVG2 144 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 AXIN1O15169 862 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PHGDHO43175 533 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 NFICP08651 508 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 INHBBP09529 407 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 IQCF3P0C7M6 154 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 MYL4P12829 197 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF182P17025 639 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PTPRAP18433 802 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 GPD1P21695 349 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 SERPINB9P50453 376 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 BMXP51813 675 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CBLBQ13191 982 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 MTA1Q13330 715 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PDAP1Q13442 181 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 AARS2Q5JTZ9 985 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 EEF1DP3Q658K8 133 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF280DQ6N043 979 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PMF1Q6P1K2 205 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 EPHX4Q8IUS5 362 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 WDR49Q8IV35 697 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 HERC6Q8IVU3 1022 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 FBXO16Q8IX29 292 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PGAM4Q8N0Y7 254 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CENPSQ8N2Z9 138 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 C1orf127Q8N9H9 656 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 OR9I1Q8NGQ6 314 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 LPGAT1Q92604 370 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 SGCDQ92629 289 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 COPS5Q92905 334 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 MFSD3Q96ES6 412 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 RMND5BQ96G75 393 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 FBXL20Q96IG2 436 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CPB2Q96IY4 423 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 BIRC8Q96P09 236 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 MPHOSPH6Q99547 160 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 APOL2Q9BQE5 337 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 TRPV6Q9H1D0 765 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 LHX5Q9H2C1 402 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 RPF2Q9H7B2 306 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ELP3Q9H9T3 547 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PLGRKTQ9HBL7 147 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ZBTB26Q9HCK0 441 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ASNSD1Q9NWL6 643 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 DTLQ9NZJ0 730 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 TXNDC16Q9P2K2 825 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PAIP2BQ9ULR5 123 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 MYRFQ9Y2G1 1151 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 RBMX2Q9Y388 322 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 AP4S1Q9Y587 144 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 LY75O60449 1722 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 TANC1Q9C0D5 1861 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF646O15015 1829 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 A0A096LPK6 155 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 NEMP2A6NFY4 417 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF839A8K0R7 811 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 TPST1O60507 370 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 GCATO75600 419 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PIGRP01833 764 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 C2P06681 752 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 TXNP10599 105 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 UGT1A1P22309 533 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 UGT1A4P22310 534 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PSMB4P28070 264 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 UGT1A3P35503 534 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 UGT1A5P35504 534 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 GRIA4P48058 902 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 GNA12Q03113 381 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms