RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 NCKAP1Q9Y2A7 1128 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 SLC27A6Q9Y2P4 619 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 EMC9Q9Y3B6 208 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 PCDHGA8Q9Y5G5 932 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 APC2O95996 2303 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 PTPRDP23468 1912 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 ADAMTS9Q9P2N4 1935 aa4.29□□□□□ -1.72
SNHG1-220ENST00000544550 MYO16Q9Y6X6 1858 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 CACNA1EQ15878 2313 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 BLACEA4D250 179 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 LRRC72A6NJI9 287 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 F8VP50 259 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 CYP26A1O43174 497 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 SIGLEC6O43699 453 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 OPA1O60313 960 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 CSO75390 466 aaKnown RBP4.28□□□□□ -1.72
SNHG1-220ENST00000544550 CDC45O75419 566 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 CISD3P0C7P0 127 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ALPPL2P10696 532 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 BDNFP23560 247 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ELAVL4P26378 380 aaKnown RBP4.28□□□□□ -1.72
SNHG1-220ENST00000544550 CHKAP35790 457 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 DUSP3P51452 185 aaPredicted RBP4.28□□□□□ -1.72
SNHG1-220ENST00000544550 NCKAP1LP55160 1127 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 NXPH1P58417 271 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 PPP2R2AP63151 447 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 NFKB2Q00653 900 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 OVGP1Q12889 678 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 MAPK7Q13164 816 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 STK3Q13188 491 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 TRIM29Q14134 588 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ZNF234Q14588 700 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 SHBQ15464 509 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 KCNT1Q5JUK3 1230 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 KIAA0895LQ68EN5 471 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ZNF662Q6ZS27 426 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 USP30Q70CQ3 517 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 RUFY3Q7L099 469 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 TMC3Q7Z5M5 1100 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 CLEC14AQ86T13 490 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 CACUL1Q86Y37 369 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 NUP93Q8N1F7 819 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ZSWIM2Q8NEG5 633 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 SPATA20Q8TB22 786 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 MYCBPAPQ8TBZ2 947 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ENOX1Q8TC92 643 aaKnown RBP4.28□□□□□ -1.72
SNHG1-220ENST00000544550 EXTL1Q92935 676 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 MYLPFQ96A32 169 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.28□□□□□ -1.724e-59■■■□□ 16.1
SNHG1-220ENST00000544550 ELOVL4Q9GZR5 314 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 TMEM60Q9H2L4 133 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ADNPQ9H2P0 1102 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 GEMIN8Q9NWZ8 242 aaKnown RBP4.28□□□□□ -1.72
SNHG1-220ENST00000544550 COMMD8Q9NX08 183 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 GFOD1Q9NXC2 390 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 PLEKHB1Q9UF11 243 aaPredicted RBP4.28□□□□□ -1.72
SNHG1-220ENST00000544550 CGGBP1Q9UFW8 167 aaPredicted RBP4.28□□□□□ -1.72
SNHG1-220ENST00000544550 FBXO10Q9UK96 956 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ITGA11Q9UKX5 1188 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ODF2LQ9ULJ1 636 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 AGAP1Q9UPQ3 857 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ZNF510Q9Y2H8 683 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 SNX14Q9Y5W7 946 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 SNX9Q9Y5X1 595 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ST14Q9Y5Y6 855 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 SLCO1B1Q9Y6L6 691 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 U3KQE9 123 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 ACACAQ13085 2346 aa4.28□□□□□ -1.72
SNHG1-220ENST00000544550 HECTD1Q9ULT8 2610 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 KALRNO60229 2985 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 ATP8B3O60423 1300 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 SHISA3A0PJX4 238 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 CDRT15L2A8MXV6 281 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 E9PMD0 336 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 K7ENM7 598 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 TLR4O00206 839 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 RNASEH1O60930 286 aaKnown RBP4.27□□□□□ -1.73
SNHG1-220ENST00000544550 TCEA3O75764 348 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 PRAMEF1O95521 474 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 CYBBP04839 570 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 ITGB3P05106 788 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 IGHV4-34P06331 123 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 KRT19P08727 400 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 IRF1P10914 325 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 CKMT1AP12532 417 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 ATP5C1P36542 298 aaKnown RBP4.27□□□□□ -1.73
SNHG1-220ENST00000544550 NUDT1P36639 197 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 CASRP41180 1078 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 ACOT2P49753 483 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 MFAP3P55082 362 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 PSMC1P62191 440 aaKnown RBP4.27□□□□□ -1.73
SNHG1-220ENST00000544550 RBP5P82980 135 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 TFAMQ00059 246 aaKnown RBP4.27□□□□□ -1.73
SNHG1-220ENST00000544550 TOB2Q14106 344 aaPredicted RBP4.27□□□□□ -1.73
SNHG1-220ENST00000544550 MORC3Q14149 939 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 POSTNQ15063 836 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 NKPD1Q17RQ9 610 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 SOWAHAQ2M3V2 549 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 KRTAP21-3Q3LHN1 58 aa4.27□□□□□ -1.73
SNHG1-220ENST00000544550 C3orf38Q5JPI3 329 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms