RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 EME2A4GXA9 379 aaPredicted RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 PRR19A6NJB7 356 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 TTLL8A6PVC2 850 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 H3BM21 787 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 EIF1AYO14602 144 aaKnown RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 NVLO15381 856 aaKnown RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 SIAH2O43255 324 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 AQP9O43315 295 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 LATO43561 262 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 PRKCGP05129 697 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 RPLP1P05386 114 aaKnown RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 FAM200BP0CF97 657 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 PRKAR1AP10644 381 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 IDEP14735 1019 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 NR1D1P20393 614 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 GARTP22102 1010 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 DNAJA1P31689 397 aaKnown RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 TXLNAP40222 546 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 PRPHP41219 470 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 UBA7P41226 1012 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 CSKP41240 450 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 SGSHP51688 502 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 ADKP55263 362 aaKnown RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 RP1P56715 2156 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 FANCCQ00597 558 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 KLRB1Q12918 225 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 ANKRD1Q15327 319 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 SURF1Q15526 300 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 EIF2S3LQ2VIR3 472 aaKnown RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 ACCSLQ4AC99 568 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 TMEM119Q4V9L6 283 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 L1TD1Q5T7N2 865 aaKnown RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 MCTP1Q6DN14 999 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 KLHDC10Q6PID8 442 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 MMS22LQ6ZRQ5 1243 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 Q6ZSR6 202 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 MAMDC2Q7Z304 686 aaPredicted RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 PTAR1Q7Z6K3 402 aaPredicted RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 CBWD2Q8IUF1 395 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 MFN1Q8IWA4 741 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 CCDC117Q8IWD4 279 aaPredicted RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 CPXM2Q8N436 756 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 CARNMT1Q8N4J0 409 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 IL22RA1Q8N6P7 574 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 Q8N9G6 341 aaPredicted RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 FBF1Q8TES7 1133 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 PDCD6IPQ8WUM4 868 aaKnown RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 RAD54LQ92698 747 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 ITPKCQ96DU7 683 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 SLC12A9Q9BXP2 914 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 ZFAND3Q9H8U3 227 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 METTL5Q9NRN9 209 aaKnown RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 BLOC1S4Q9NUP1 217 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 FOXJ2Q9P0K8 574 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 SIRPGQ9P1W8 387 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 SFMBT1Q9UHJ3 866 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 GGT7Q9UJ14 662 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 PADI4Q9UM07 663 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 ERVW-1Q9UQF0 538 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 DMTF1Q9Y222 760 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 KIF3AQ9Y496 699 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 LOXL2Q9Y4K0 774 aa4.93□□□□□ -1.62
LIMS1-214ENST00000542845 FBN2P35556 2912 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 A0A1W2PQU0 124 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 TARSL2A2RTX5 802 aaKnown RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 EFCAB7A8K855 629 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 HHLA1C9JL84 531 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 NKX2-8O15522 239 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 PLRG1O43660 514 aaKnown RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CPNE3O75131 537 aaKnown RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 PCDH8O95206 1070 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CLDN1O95832 211 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 ASLP04424 464 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 RPLP0P05388 317 aaKnown RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 FAM163BP0C2L3 166 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 VAV1P15498 845 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 AKT2P31751 481 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 DRD3P35462 400 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 NNMTP40261 264 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 ETV5P41161 510 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 STK19P49842 368 aaPredicted RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CYP2J2P51589 502 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CASP5P51878 434 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 NDST1P52848 882 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 PDX1P52945 283 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 YWHAGP61981 247 aaKnown RBP eCLIP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CCL7P80098 99 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CNTN1Q12860 1018 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 BIRC3Q13489 604 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 DEFB109BQ30KR1 87 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 ZNF699Q32M78 642 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 LACTB2Q53H82 288 aaPredicted RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 ZNF667Q5HYK9 610 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 PHF19Q5T6S3 580 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 C1QL3Q5VWW1 255 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 NUGGCQ68CJ6 796 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CAPRIN2Q6IMN6 1127 aaKnown RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 ESRP1Q6NXG1 681 aaKnown RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CLEC20AQ6ZU45 233 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 SV2AQ7L0J3 742 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms