RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 CKAP4Q07065 602 aaKnown RBP9.54□□□□□ -0.88
DDX55-208ENST00000541259 PPIDQ08752 370 aaKnown RBP9.54□□□□□ -0.88
DDX55-208ENST00000541259 XRCC4Q13426 336 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 BYSLQ13895 437 aaKnown RBP9.54□□□□□ -0.88
DDX55-208ENST00000541259 PRKD1Q15139 912 aaPredicted RBP9.54□□□□□ -0.88
DDX55-208ENST00000541259 PLEKHG6Q3KR16 790 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 PARP15Q460N3 678 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 FUT11Q495W5 492 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 PITRM1Q5JRX3 1037 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 IL31Q6EBC2 164 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 DARS2Q6PI48 645 aaKnown RBP9.54□□□□□ -0.88
DDX55-208ENST00000541259 TXNDC11Q6PKC3 985 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 LINGO4Q6UY18 593 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 ZNF783Q6ZMS7 281 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 BZW1Q7L1Q6 419 aaKnown RBP9.54□□□□□ -0.88
DDX55-208ENST00000541259 PRUNE1Q86TP1 453 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 ADIPOR2Q86V24 386 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 ATPAF2Q8N5M1 289 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.54□□□□□ -0.88
DDX55-208ENST00000541259 ATXN2LQ8WWM7 1075 aaKnown RBP9.54□□□□□ -0.88
DDX55-208ENST00000541259 QKIQ96PU8 341 aaKnown RBP eCLIP9.54□□□□□ -0.88
DDX55-208ENST00000541259 KRT12Q99456 494 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 TMEM121Q9BTD3 319 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 USP29Q9HBJ7 922 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 CD320Q9NPF0 282 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 TRPV5Q9NQA5 729 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 DONSONQ9NYP3 566 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 IPO11Q9UI26 975 aaKnown RBP9.54□□□□□ -0.88
DDX55-208ENST00000541259 VPS28Q9UK41 221 aa9.54□□□□□ -0.88
DDX55-208ENST00000541259 DRG1Q9Y295 367 aaKnown RBP9.54□□□□□ -0.88
DDX55-208ENST00000541259 NCOR1O75376 2440 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 MUC22E2RYF6 1773 aaPredicted RBP9.53□□□□□ -0.88
DDX55-208ENST00000541259 GOLGA6L10A0A0M3HER8 536 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 BCLAF3A2AJT9 711 aaKnown RBP9.53□□□□□ -0.88
DDX55-208ENST00000541259 CTAGE15A4D2H0 777 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 SHISA7A6NL88 538 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 HACD1B0YJ81 288 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 PRRT4C9JH25 899 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 SPECC1L-ADORA2AF8WAN1 911 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 KCNK1O00180 336 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 CBX4O00257 560 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 PPP1R12AO14974 1030 aaPredicted RBP9.53□□□□□ -0.88
DDX55-208ENST00000541259 NCAM2O15394 837 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 PRAMEF11O60813 436 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 CD160O95971 181 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 PEX11BO96011 259 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 MT-CO1P00395 513 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 CTAGE8P0CG41 777 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 SRFP11831 508 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 ETS1P14921 441 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 MX2P20592 715 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 CCNCP24863 283 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 PTGIRP43119 386 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 OXCT1P55809 520 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 ARF5P84085 180 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 SLC12A1Q13621 1099 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 SLC45A4Q5BKX6 768 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 MBLAC2Q68D91 279 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 GRAMD4Q6IC98 578 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 DRICH1Q6PGQ1 229 aaPredicted RBP9.53□□□□□ -0.88
DDX55-208ENST00000541259 CCDC137Q6PK04 289 aaKnown RBP9.53□□□□□ -0.88
DDX55-208ENST00000541259 CTAGE6Q86UF2 777 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 RNF135Q8IUD6 432 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 CTAGE4Q8IX94 777 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 CCDC13Q8IYE1 715 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 FAM71DQ8N9W8 422 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 GLIS1Q8NBF1 620 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 NOA1Q8NC60 698 aaKnown RBP9.53□□□□□ -0.88
DDX55-208ENST00000541259 USP33Q8TEY7 942 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 CYB5D2Q8WUJ1 264 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 TFB1MQ8WVM0 346 aaKnown RBP9.53□□□□□ -0.88
DDX55-208ENST00000541259 SORCS1Q8WY21 1168 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 NKD2Q969F2 451 aaPredicted RBP9.53□□□□□ -0.88
DDX55-208ENST00000541259 HDAC11Q96DB2 347 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 RPL10LQ96L21 214 aaKnown RBP9.53□□□□□ -0.88
DDX55-208ENST00000541259 NECAB3Q96P71 396 aaPredicted RBP9.53□□□□□ -0.88
DDX55-208ENST00000541259 TSGA13Q96PP4 275 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 PNKPQ96T60 521 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 CEP41Q9BYV8 373 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 FRMD8P1Q9BZ68 369 aaPredicted RBP9.53□□□□□ -0.88
DDX55-208ENST00000541259 SP110Q9HB58 689 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 PDFQ9HBH1 243 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 SLC2A4RGQ9NR83 387 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 HOMER3Q9NSC5 361 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 SEPT10Q9P0V9 454 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 DEC1Q9P2X7 70 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 VPS51Q9UID3 782 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 ZNF148Q9UQR1 794 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 SLC27A6Q9Y2P4 619 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 PIAS3Q9Y6X2 628 aa9.53□□□□□ -0.88
DDX55-208ENST00000541259 CCDC188H7C350 402 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 K7ERQ8 282 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 MATN3O15232 486 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 KCNN4O15554 427 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 KAT7O95251 611 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 JCHAINP01591 159 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 ITGAVP06756 1048 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 ZSCAN5DPP0CG00 497 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 CD72P21854 359 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 CHRNA3P32297 505 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms