RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TRIP10Q15642 601 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 GTF3C2Q8WUA4 911 aaPredicted RBP19.6■□□□□ 0.73
VPS28-213ENST00000530983 MED10Q9BTT4 135 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 C1QTNF1Q9BXJ1 281 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 ILKAPQ9H0C8 392 aaPredicted RBP19.6■□□□□ 0.73
VPS28-213ENST00000530983 TRIP12Q14669 1992 aaPredicted RBP19.6■□□□□ 0.73
VPS28-213ENST00000530983 SMIM35A0A1B0GVV1 85 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 MAGEB16A2A368 324 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 MBLAC1A4D2B0 266 aaPredicted RBP19.6■□□□□ 0.73
VPS28-213ENST00000530983 NMBRP28336 390 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 NPY2RP49146 381 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 DAOAP59103 153 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 DLG1Q12959 904 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 SNAPC2Q13487 334 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 MED21Q13503 144 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 GRM3Q14832 879 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 SNX17Q15036 470 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 CNPY1Q3B7I2 92 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 TBC1D25Q3MII6 688 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 GPRIN1Q7Z2K8 1008 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 CTU1Q7Z7A3 348 aaKnown RBP19.6■□□□□ 0.73
VPS28-213ENST00000530983 IL22Q9GZX6 179 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 DMAP1Q9NPF5 467 aaPredicted RBP19.6■□□□□ 0.73
VPS28-213ENST00000530983 UBP1Q9NZI7 540 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 SLC39A10Q9ULF5 831 aa19.6■□□□□ 0.73
VPS28-213ENST00000530983 GABRDO14764 452 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 PIM1P11309 404 aaPredicted RBP19.59■□□□□ 0.73
VPS28-213ENST00000530983 PIK3R1P27986 724 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 GALNT2Q10471 571 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 PPM1LQ5SGD2 360 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 DNAJB3Q8WWF6 145 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 CNDP1Q96KN2 507 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 PPP1R36Q96LQ0 422 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 GPR22Q99680 433 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 DRC3Q9H069 523 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 TASP1Q9H6P5 420 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 IRAK4Q9NWZ3 460 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 PACSIN3Q9UKS6 424 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 TRHDEQ9UKU6 1024 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 TBC1D30Q9Y2I9 924 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 RAP2CQ9Y3L5 183 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 IPPQ9Y573 584 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 C9IYK1 514 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 NEMP1O14524 444 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 HDAC3O15379 428 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 MTSS1O43312 755 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 FAM200BP0CF97 657 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 VCLP18206 1134 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 EPHA3P29320 983 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 NUDT2P50583 147 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 GJA9P57773 515 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 LSM12Q3MHD2 195 aaKnown RBP19.59■□□□□ 0.73
VPS28-213ENST00000530983 INTS6LQ5JSJ4 861 aaKnown RBP19.59■□□□□ 0.73
VPS28-213ENST00000530983 LIPMQ5VYY2 423 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 ZYG11AQ6WRX3 759 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 ZSCAN18Q8TBC5 510 aaPredicted RBP19.59■□□□□ 0.73
VPS28-213ENST00000530983 DPF3Q92784 378 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 CRTAC1Q9NQ79 661 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 TMEM30AQ9NV96 361 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 SNX10Q9Y5X0 201 aa19.59■□□□□ 0.73
VPS28-213ENST00000530983 UNCXA6NJT0 531 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 AIM2O14862 343 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 THRAP10827 490 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 NCAM1P13591 858 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 GRIA4P48058 902 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 RPL14P50914 215 aaKnown RBP19.58■□□□□ 0.73
VPS28-213ENST00000530983 ANO4Q32M45 955 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 RASIP1Q5U651 963 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 ITPRIPL1Q6GPH6 555 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 ZC3HC1Q86WB0 502 aaKnown RBP19.58■□□□□ 0.73
VPS28-213ENST00000530983 SNX32Q86XE0 403 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 SMG8Q8ND04 991 aaKnown RBP19.58■□□□□ 0.73
VPS28-213ENST00000530983 MAML3Q96JK9 1138 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 TSPAN18Q96SJ8 248 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 UBE2OQ9C0C9 1292 aaKnown RBP19.58■□□□□ 0.73
VPS28-213ENST00000530983 BRD8Q9H0E9 1235 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 DDIT4Q9NX09 232 aa19.58■□□□□ 0.73
VPS28-213ENST00000530983 CCDC78A2IDD5 438 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 STRNO43815 780 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 FBXO21O94952 628 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 APOA4P06727 396 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 LIN52Q52LA3 116 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 ARL13AQ5H913 290 aaPredicted RBP19.58■□□□□ 0.72
VPS28-213ENST00000530983 SEL1L3Q68CR1 1132 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 RDH11Q8TC12 318 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 PGAP3Q96FM1 320 aaPredicted RBP19.58■□□□□ 0.72
VPS28-213ENST00000530983 TEKT5Q96M29 485 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 APBA2Q99767 749 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 SMOQ99835 787 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 SPATA16Q9BXB7 569 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 CACNG4Q9UBN1 327 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 STK39Q9UEW8 545 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 MID2Q9UJV3 735 aa19.58■□□□□ 0.72
VPS28-213ENST00000530983 FNDC1Q4ZHG4 1894 aaPredicted RBP19.57■□□□□ 0.72
VPS28-213ENST00000530983 RGSL1A5PLK6 1076 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 PTGESO14684 152 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 PHGDHO43175 533 aaKnown RBP19.57■□□□□ 0.72
VPS28-213ENST00000530983 GRID2O43424 1007 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 PEX1O43933 1283 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 F2P00734 622 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms