RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CCNB1P14635 433 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 FAM193AP78312 1265 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 IFFO1Q0D2I5 559 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 SLC29A2Q14542 456 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 POLD3Q15054 466 aaPredicted RBP21.64■■□□□ 1.05
VPS28-212ENST00000530836 C6orf118Q5T5N4 469 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 Q6ZNB5 142 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 TAB3Q8N5C8 712 aaPredicted RBP21.64■■□□□ 1.05
VPS28-212ENST00000530836 SMARCD2Q92925 531 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 MAGEH1Q9H213 219 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 EPB41L4BQ9H329 900 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 NOL6Q9H6R4 1146 aaKnown RBP21.64■■□□□ 1.05
VPS28-212ENST00000530836 XAB2Q9HCS7 855 aaKnown RBP21.64■■□□□ 1.05
VPS28-212ENST00000530836 GOLGA6AQ9NYA3 693 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 IPO11Q9UI26 975 aaKnown RBP21.64■■□□□ 1.05
VPS28-212ENST00000530836 ARHGAP26Q9UNA1 814 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 SH3BP1Q9Y3L3 701 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 TCRBV7S3A2A0A539 114 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 TSHRP16473 764 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 LMAN1P49257 510 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 PDIA2Q13087 525 aaKnown RBP21.63■■□□□ 1.05
VPS28-212ENST00000530836 PRPSAP1Q14558 356 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 RFWD3Q6PCD5 774 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 SETD3Q86TU7 594 aaPredicted RBP21.63■■□□□ 1.05
VPS28-212ENST00000530836 ARID3BQ8IVW6 561 aaPredicted RBP21.63■■□□□ 1.05
VPS28-212ENST00000530836 FAM217AQ8IXS0 508 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 CMTM8Q8IZV2 173 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 NSMCE1Q8WV22 266 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 MAML1Q92585 1016 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 LRRC39Q96DD0 335 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 UHRF1Q96T88 793 aaPredicted RBP21.63■■□□□ 1.05
VPS28-212ENST00000530836 IL12RB2Q99665 862 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 SH3GL2Q99962 352 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 GBA3Q9H227 469 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 TRPV4Q9HBA0 871 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 CD320Q9NPF0 282 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 NFS1Q9Y697 457 aa21.63■■□□□ 1.05
VPS28-212ENST00000530836 GOLGA8MH3BSY2 632 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 PSMD3O43242 534 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 GREM1O60565 184 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 JCHAINP01591 159 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 ABHD2P08910 425 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 MLNP12872 115 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 RENBPP51606 427 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 IRAK1P51617 712 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 HNRNPDQ14103 355 aaKnown RBP21.62■■□□□ 1.05
VPS28-212ENST00000530836 DNAJC21Q5F1R6 531 aaKnown RBP21.62■■□□□ 1.05
VPS28-212ENST00000530836 PARM1Q6UWI2 310 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 MTSS1LQ765P7 747 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 NXPE3Q969Y0 559 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 RSPH14Q9UHP6 348 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 DENND4CQ5VZ89 1909 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.62■■□□□ 1.05
VPS28-212ENST00000530836 AVPR1AP37288 418 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 ETFBP38117 255 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 IL10RBQ08334 325 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 ZBTB17Q13105 803 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 ZNF177Q13360 481 aaPredicted RBP21.62■■□□□ 1.05
VPS28-212ENST00000530836 HTR4Q13639 388 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 FAXCQ5TGI0 409 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 ZNF783Q6ZMS7 281 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 ZBED8Q8IZ13 594 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 CPXM2Q8N436 756 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 DEPDC1BQ8WUY9 529 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 FGF14Q92915 247 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 HMCESQ96FZ2 354 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 PWWP2AQ96N64 755 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 SERPINB12Q96P63 405 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 KCNK12Q9HB15 430 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 DNAJC17Q9NVM6 304 aaKnown RBP21.62■■□□□ 1.05
VPS28-212ENST00000530836 HAUS2Q9NVX0 235 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 NINJ2Q9NZG7 142 aa21.62■■□□□ 1.05
VPS28-212ENST00000530836 TCF20Q9UGU0 1960 aaKnown RBP21.61■■□□□ 1.05
VPS28-212ENST00000530836 ILVBLA1L0T0 632 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 GOLGA8KD6RF30 607 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 AP3B1O00203 1094 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 ZBTB24O43167 697 aaPredicted RBP21.61■■□□□ 1.05
VPS28-212ENST00000530836 NEBLO76041 1014 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 FCARP24071 287 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 PSMB4P28070 264 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 IFNAR2P48551 515 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 SERINC3Q13530 473 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 KYNUQ16719 465 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 TANGO2Q6ICL3 276 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 CFAP52Q8N1V2 620 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 HJURPQ8NCD3 748 aaPredicted RBP21.61■■□□□ 1.05
VPS28-212ENST00000530836 ST13P5Q8NFI4 369 aaPredicted RBP21.61■■□□□ 1.05
VPS28-212ENST00000530836 PYROXD1Q8WU10 500 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 NUP205Q92621 2012 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 PRICKLE1Q96MT3 831 aaPredicted RBP21.61■■□□□ 1.05
VPS28-212ENST00000530836 AGAP3Q96P47 875 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 CCDC77Q9BR77 488 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 TMEM109Q9BVC6 243 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 ROPN1BQ9BZX4 212 aaPredicted RBP21.61■■□□□ 1.05
VPS28-212ENST00000530836 ROPN1Q9HAT0 212 aaPredicted RBP21.61■■□□□ 1.05
VPS28-212ENST00000530836 SP110Q9HB58 689 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 ZFP14Q9HCL3 533 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 TBC1D30Q9Y2I9 924 aa21.61■■□□□ 1.05
VPS28-212ENST00000530836 AAR2Q9Y312 384 aaKnown RBP21.61■■□□□ 1.05
VPS28-212ENST00000530836 E2F8A0AVK6 867 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms