RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.08■□□□□ 0.975e-6■□□□□ 10.2
VPS28-209ENST00000528142 INSL5Q9Y5Q6 135 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 FAM169AQ9Y6X4 670 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 ZCWPW2A0A1B0GU75 182 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 FAM237BA0A1B0GVD1 139 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 TM9SF1O15321 606 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 RAMP2O60895 175 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 KRT38O76015 456 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 USP1O94782 785 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 KLKB1P03952 638 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 PYGBP11216 843 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 TAC1P20366 129 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 ELF1P32519 619 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 SLC11A2P49281 568 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 NEK3P51956 506 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 YBEYP58557 167 aaPredicted RBP21.08■□□□□ 0.96
VPS28-209ENST00000528142 HTRA4P83105 476 aaPredicted RBP21.08■□□□□ 0.96
VPS28-209ENST00000528142 MGAT5Q09328 741 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 POLD3Q15054 466 aaPredicted RBP21.08■□□□□ 0.96
VPS28-209ENST00000528142 TAF12Q16514 161 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 GKAP1Q5VSY0 366 aaPredicted RBP21.08■□□□□ 0.96
VPS28-209ENST00000528142 DENND5AQ6IQ26 1287 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 TMEM150AQ86TG1 271 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 TEX26Q8N6G2 289 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 TCP10LQ8TDR4 215 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 CDKL2Q92772 493 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 PSMG2Q969U7 264 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 TBL1YQ9BQ87 522 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 KLF16Q9BXK1 252 aaPredicted RBP21.08■□□□□ 0.96
VPS28-209ENST00000528142 ZBP1Q9H171 429 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 PCDHB12Q9Y5F1 795 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 SHROOM3Q8TF72 1996 aa21.08■□□□□ 0.96
VPS28-209ENST00000528142 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.07■□□□□ 0.96
VPS28-209ENST00000528142 C2orf78A6NCI8 922 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 RFPL1O75677 317 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 STC2O76061 302 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 FGF18O76093 207 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 TPH1P17752 444 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 OR1E1P30953 314 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 SLC10A7Q0GE19 358 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 SERINC3Q13530 473 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 ANKRD20A4Q4UJ75 823 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 RFWD3Q6PCD5 774 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 CERS2Q96G23 380 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 APOPT1Q96IL0 206 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 TGS1Q96RS0 853 aaKnown RBP21.07■□□□□ 0.96
VPS28-209ENST00000528142 PAIP2Q9BPZ3 127 aaKnown RBP21.07■□□□□ 0.96
VPS28-209ENST00000528142 RETREG1Q9H6L5 497 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 GKN1Q9NS71 199 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 CXXC1Q9P0U4 656 aaPredicted RBP21.07■□□□□ 0.96
VPS28-209ENST00000528142 SOX13Q9UN79 622 aa21.07■□□□□ 0.96
VPS28-209ENST00000528142 ATP9BO43861 1147 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 EPHB3P54753 998 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 IL10RBQ08334 325 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 BMPR2Q13873 1038 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 MARC1Q5VT66 337 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 LVRNQ6Q4G3 990 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 PACS1Q6VY07 963 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 TIFABQ6ZNK6 161 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 RGS9BPQ6ZS82 235 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 SPATS2Q86XZ4 545 aaKnown RBP21.06■□□□□ 0.96
VPS28-209ENST00000528142 DENND1CQ8IV53 801 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.06■□□□□ 0.96
VPS28-209ENST00000528142 IPMKQ8NFU5 416 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 ZNF669Q96BR6 464 aaPredicted RBP21.06■□□□□ 0.96
VPS28-209ENST00000528142 KLHL5Q96PQ7 755 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 SLC25A51Q9H1U9 297 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 SP110Q9HB58 689 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 SLC17A7Q9P2U7 560 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 SLC17A6Q9P2U8 582 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 STK39Q9UEW8 545 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 DOCK4Q8N1I0 1966 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 ERVK-10P10266 1014 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 CTSAP10619 480 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 CNTFP26441 200 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 CCNFP41002 786 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 PDK4Q16654 411 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 C6orf89Q6UWU4 347 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 CFAP52Q8N1V2 620 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 MFSD3Q96ES6 412 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 IMP4Q96G21 291 aaKnown RBP21.06■□□□□ 0.96
VPS28-209ENST00000528142 MRGPRX2Q96LB1 330 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 FICDQ9BVA6 458 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 KIFC1Q9BW19 673 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 NSRP1Q9H0G5 558 aaKnown RBP21.06■□□□□ 0.96
VPS28-209ENST00000528142 CHRAC1Q9NRG0 131 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 FGFR1OP2Q9NVK5 253 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 UXTQ9UBK9 157 aaPredicted RBP21.06■□□□□ 0.96
VPS28-209ENST00000528142 PRDM4Q9UKN5 801 aa21.06■□□□□ 0.96
VPS28-209ENST00000528142 ZBBXA8MT70 800 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 H3BNC9 293 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 LPXNO60711 386 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 NEBLO76041 1014 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 FGBP02675 491 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 F11P03951 625 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 ADRA1DP25100 572 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 CORO1AP31146 461 aaKnown RBP21.05■□□□□ 0.96
VPS28-209ENST00000528142 ACVRL1P37023 503 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 CREMQ03060 361 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 FPGSQ05932 587 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms