RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 SFNP31947 248 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 LONP1P36776 959 aaKnown RBP4.89□□□□□ -1.63
USP48-211ENST00000526044 UBA7P41226 1012 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 VIPR2P41587 438 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 SLC11A2P49281 568 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 UCP3P55916 312 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 SIM1P81133 766 aaPredicted RBP4.89□□□□□ -1.63
USP48-211ENST00000526044 SATB1Q01826 763 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 ITGB3BPQ13352 177 aaPredicted RBP4.89□□□□□ -1.63
USP48-211ENST00000526044 PPP2R5CQ13362 524 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 GBX1Q14549 363 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 CNN3Q15417 329 aaKnown RBP4.89□□□□□ -1.63
USP48-211ENST00000526044 KRTAP15-1Q3LI76 137 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 DUSP28Q4G0W2 176 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 CELF3Q5SZQ8 465 aaKnown RBP4.89□□□□□ -1.63
USP48-211ENST00000526044 TMEM63BQ5T3F8 832 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 LMBRD2Q68DH5 695 aaPredicted RBP4.89□□□□□ -1.63
USP48-211ENST00000526044 NCAPH2Q6IBW4 605 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 TMEM108Q6UXF1 575 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 CHST15Q7LFX5 561 aaPredicted RBP4.89□□□□□ -1.63
USP48-211ENST00000526044 CTU1Q7Z7A3 348 aaKnown RBP4.89□□□□□ -1.63
USP48-211ENST00000526044 FAM109AQ8N4B1 249 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 ERMNQ8TAM6 284 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 SEPT1Q8WYJ6 367 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 TFAP2BQ92481 460 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 FAM136AQ96C01 138 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 PDLIM2Q96JY6 352 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 AK8Q96MA6 479 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 PANK2Q9BZ23 570 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 KLC4Q9NSK0 619 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 OBP2AQ9NY56 170 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 FOXJ2Q9P0K8 574 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 SLC9A2Q9UBY0 812 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 DDX20Q9UHI6 824 aaKnown RBP4.89□□□□□ -1.63
USP48-211ENST00000526044 FBXO2Q9UK22 296 aaPredicted RBP4.89□□□□□ -1.63
USP48-211ENST00000526044 Q9Y3F1 56 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 DOCK5Q9H7D0 1870 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 ELP1O95163 1332 aa4.89□□□□□ -1.63
USP48-211ENST00000526044 MYH9P35579 1960 aaKnown RBP4.88□□□□□ -1.63
USP48-211ENST00000526044 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.88□□□□□ -1.63
USP48-211ENST00000526044 GSTTP1A0A1W2PQM5 241 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 A6NNZ2 444 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 ZAR1LA6NP61 321 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 DCLK1O15075 740 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 CHMP2AO43633 222 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 DKC1O60832 514 aaKnown RBP eCLIP4.88□□□□□ -1.63
USP48-211ENST00000526044 DUSP11O75319 330 aaKnown RBP4.88□□□□□ -1.63
USP48-211ENST00000526044 SLITRK3O94933 977 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 GGPS1O95749 300 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 NUDT3O95989 172 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 HRGP04196 525 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 CHRM2P08172 466 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 XRCC6P12956 609 aaKnown RBP eCLIP4.88□□□□□ -1.63
USP48-211ENST00000526044 CYBAP13498 195 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 AKR1A1P14550 325 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 EN2P19622 333 aaPredicted RBP4.88□□□□□ -1.63
USP48-211ENST00000526044 UBA1P22314 1058 aaKnown RBP4.88□□□□□ -1.63
USP48-211ENST00000526044 CCND3P30281 292 aaPredicted RBP4.88□□□□□ -1.63
USP48-211ENST00000526044 CDC25AP30304 524 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 SLC7A1P30825 629 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 PXNP49023 591 aaPredicted RBP4.88□□□□□ -1.63
USP48-211ENST00000526044 JAK3P52333 1124 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 ZNF134P52741 427 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 LOXL3P58215 753 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 ACTR2P61160 394 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 UBE2HP62256 183 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 SP4Q02446 784 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 GRM3Q14832 879 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 ZRSR1Q15695 479 aaKnown RBP4.88□□□□□ -1.63
USP48-211ENST00000526044 SLC9C1Q4G0N8 1177 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 SPECC1Q5M775 1068 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 RRAGBQ5VZM2 374 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 KRT79Q5XKE5 535 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 ICE2Q659A1 982 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 SWSAP1Q6NVH7 229 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 MIS18BP1Q6P0N0 1132 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 FBXO46Q6PJ61 603 aaPredicted RBP4.88□□□□□ -1.63
USP48-211ENST00000526044 SHC4Q6S5L8 630 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 METTL7BQ6UX53 244 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 CCDC149Q6ZUS6 474 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 MIER3Q7Z3K6 550 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 SMAP1Q8IYB5 467 aaPredicted RBP4.88□□□□□ -1.63
USP48-211ENST00000526044 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.88□□□□□ -1.63
USP48-211ENST00000526044 SLC15A4Q8N697 577 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 SIMC1Q8NDZ2 872 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 TRPV1Q8NER1 839 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 RDM1Q8NG50 284 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 OR6J1Q8NGC5 347 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 CALML4Q96GE6 196 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 EPSTI1Q96J88 318 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 SPATA33Q96N06 139 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 EIF2AK1Q9BQI3 630 aaKnown RBP4.88□□□□□ -1.63
USP48-211ENST00000526044 DUSP26Q9BV47 211 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 PTDSS2Q9BVG9 487 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 ALG8Q9BVK2 526 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 ACTRT3Q9BYD9 372 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 DPH1Q9BZG8 443 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 CCSER1Q9C0I3 900 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 UNC45AQ9H3U1 944 aa4.88□□□□□ -1.63
USP48-211ENST00000526044 TLK1Q9UKI8 766 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms