RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 CEP104O60308 925 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 SEC14L2O76054 403 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 PORP16435 677 aaPredicted RBP7.93□□□□□ -1.14
LSM1-202ENST00000520286 MC1RQ01726 317 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 CREB5Q02930 508 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 FOXI1Q12951 378 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 KPNB1Q14974 876 aaKnown RBP7.93□□□□□ -1.14
LSM1-202ENST00000520286 FBXO43Q4G163 708 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 ARL13AQ5H913 290 aaPredicted RBP7.93□□□□□ -1.14
LSM1-202ENST00000520286 MIIPQ5JXC2 388 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 CC2D1BQ5T0F9 858 aaKnown RBP7.93□□□□□ -1.14
LSM1-202ENST00000520286 MFSD4BQ5TF39 518 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 AADACL2Q6P093 401 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 DHRS13Q6UX07 377 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 SERPINA13PQ6UXR4 307 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 RANBP10Q6VN20 620 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 GHDCQ8N2G8 530 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 HSPH1Q92598 858 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 PERPQ96FX8 193 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 ARL8BQ9NVJ2 186 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 HCFC1R1Q9NWW0 138 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 LIMA1Q9UHB6 759 aaKnown RBP7.93□□□□□ -1.14
LSM1-202ENST00000520286 KCNE2Q9Y6J6 123 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 UACAQ9BZF9 1416 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 UHRF1BP1LA0JNW5 1464 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 TEX14Q8IWB6 1497 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 C17orf113A0A1B0GUU1 675 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 hCG_1807616A0A1W2PRN6 198 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 TCRBV5S1A1TA0A578 114 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 BTBD19C9JJ37 291 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 PLOD3O60568 738 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 STARD3NLO95772 234 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 AKR1B1P15121 316 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 HADHAP40939 763 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 PTPN9P43378 593 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 HOXA4Q00056 320 aaPredicted RBP7.92□□□□□ -1.14
LSM1-202ENST00000520286 CEP85Q6P2H3 762 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 TMCO3Q6UWJ1 677 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 C17orf99Q6UX52 265 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 RFX6Q8HWS3 928 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 CPXM2Q8N436 756 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 SCAIQ8N9R8 606 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 ZNF347Q96SE7 839 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 FTOQ9C0B1 505 aaKnown RBP eCLIP7.92□□□□□ -1.14
LSM1-202ENST00000520286 TXNRD2Q9NNW7 524 aa7.92□□□□□ -1.14
LSM1-202ENST00000520286 ZNF215Q9UL58 517 aaPredicted RBP7.92□□□□□ -1.14
LSM1-202ENST00000520286 CORO1CQ9ULV4 474 aaPredicted RBP7.92□□□□□ -1.14
LSM1-202ENST00000520286 PPRC1Q5VV67 1664 aaKnown RBP7.92□□□□□ -1.14
LSM1-202ENST00000520286 H7C1Q1 480 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 VILLO15195 856 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 IDUAP35475 653 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 NLRP5P59047 1200 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 ZBTB16Q05516 673 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 TMEM115Q12893 351 aaPredicted RBP7.91□□□□□ -1.14
LSM1-202ENST00000520286 ACVR2BQ13705 512 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 ZNF169Q14929 603 aaPredicted RBP7.91□□□□□ -1.14
LSM1-202ENST00000520286 MED22Q15528 200 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 PFKFB3Q16875 520 aaPredicted RBP7.91□□□□□ -1.14
LSM1-202ENST00000520286 RHPN2Q8IUC4 686 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 VRK3Q8IV63 474 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 CCDC105Q8IYK2 499 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 FAM120BQ96EK7 910 aaKnown RBP7.91□□□□□ -1.14
LSM1-202ENST00000520286 BBC3Q96PG8 261 aaPredicted RBP7.91□□□□□ -1.14
LSM1-202ENST00000520286 HEMGNQ9BXL5 484 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 MMRN2Q9H8L6 949 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 Q9N2J8 555 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 PLSCR4Q9NRQ2 329 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 HSPB7Q9UBY9 170 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 DHDHQ9UQ10 334 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 TOP2BQ02880 1626 aa7.91□□□□□ -1.14
LSM1-202ENST00000520286 EMSYQ7Z589 1322 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 TCRBV7S3A2A0A539 114 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 OR6C68A6NDL8 312 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 PABPN1LA6NDY0 278 aaKnown RBP7.9□□□□□ -1.14
LSM1-202ENST00000520286 TACC1O75410 805 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 TSPAN9O75954 239 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 ZNF202O95125 648 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 HLA-DQA2P01906 255 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 HNRNPCP07910 306 aaKnown RBP eCLIP7.9□□□□□ -1.14
LSM1-202ENST00000520286 TM4SF1P30408 202 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 CPOXP36551 454 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 CTSWP56202 376 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 CHAF1BQ13112 559 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 AWAT1Q58HT5 328 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 TSTD2Q5T7W7 516 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 CDC73Q6P1J9 531 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 PDXDC1Q6P996 788 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 ZNF474Q6S9Z5 364 aaPredicted RBP7.9□□□□□ -1.14
LSM1-202ENST00000520286 SZRD1Q7Z422 152 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 NEK8Q86SG6 692 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 KLBQ86Z14 1044 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 DNAAF1Q8NEP3 725 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 SLC9A6Q92581 669 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 ZNF764Q96H86 408 aaPredicted RBP7.9□□□□□ -1.14
LSM1-202ENST00000520286 GATA5Q9BWX5 397 aaPredicted RBP7.9□□□□□ -1.14
LSM1-202ENST00000520286 RAPGEFL1Q9UHV5 662 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 FBXO4Q9UKT5 387 aa7.9□□□□□ -1.14
LSM1-202ENST00000520286 KDM5BQ9UGL1 1544 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 PTPRMP28827 1452 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 LIPT2A6NK58 231 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms