RNA–Protein interactions for RNA: ENST00000515479.5

RUFY3-215, Transcript of RUN and FYVE domain containing 3, human

TSL 2

Gene RUFY3, Length 893 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RUFY3-215	ENST00000515479	NDST3	O95803	873 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	RFPL3S	P0C7P2	107 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	EGR1	P18146	543 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	GABRB3	P28472	473 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	STT3A	P46977	705 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	CASP5	P51878	434 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	WDR43	Q15061	677 aa	Known RBP eCLIP	4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	C16orf89	Q6UX73	402 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	DLK2	Q6UY11	383 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	C18orf65	Q6ZTR6	163 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	TMEM174	Q8WUU8	243 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	MIB2	Q96AX9	1013 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	CCDC136	Q96JN2	1154 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	NUDT22	Q9BRQ3	303 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	SF3B5	Q9BWJ5	86 aa	Known RBP	4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	ARHGAP39	Q9C0H5	1083 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	DDX21	Q9NR30	783 aa	Known RBP eCLIP	4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	FBXO28	Q9NVF7	368 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	LAMP3	Q9UQV4	416 aa		4.98	□□□□□ -1.61
RUFY3-215	ENST00000515479	TTC21B	Q7Z4L5	1316 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	TOGARAM1	Q9Y4F4	1720 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	SCN4A	P35499	1836 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	NOTCH4	Q99466	2003 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	SIPA1L3	O60292	1781 aa	Predicted RBP	4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	KDM3B	Q7LBC6	1761 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	EIF5B	O60841	1220 aa	Known RBP	4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	WNT1	P04628	370 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	SRGAP2B	P0DMP2	458 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	DPEP1	P16444	411 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	KCNJ4	P48050	445 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	ASIC2	Q16515	512 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	PDXDC1	Q6P996	788 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	DCP1B	Q8IZD4	617 aa	Known RBP	4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	EXOC6	Q8TAG9	804 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	OIT3	Q8WWZ8	545 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	ATP2A3	Q93084	1043 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	NTPCR	Q9BSD7	190 aa	Known RBP	4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	VPS33B	Q9H267	617 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	EDC4	Q6P2E9	1401 aa	Known RBP	4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	PCDH11X	Q9BZA7	1347 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	PCDH11Y	Q9BZA8	1340 aa		4.97	□□□□□ -1.61
RUFY3-215	ENST00000515479	EME2	A4GXA9	379 aa	Predicted RBP	4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	NPC1	O15118	1278 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	PPP6R2	O75170	966 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	TNFRSF8	P28908	595 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	HOXA11	P31270	313 aa	Predicted RBP	4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	PRIM2	P49643	509 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	NSUN2	Q08J23	767 aa	Known RBP eCLIP	4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	HMBOX1	Q6NT76	420 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	TTC30A	Q86WT1	665 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	DGKH	Q86XP1	1220 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	OR52N4	Q8NGI2	321 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	CLMN	Q96JQ2	1002 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	MEIS3	Q99687	375 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	COLEC11	Q9BWP8	271 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	TASP1	Q9H6P5	420 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	SELENON	Q9NZV5	590 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	PCDHA7	Q9UN72	937 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	ICK	Q9UPZ9	632 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	MAN2B2	Q9Y2E5	1009 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	UBE2J1	Q9Y385	318 aa	Predicted RBP	4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	PCDHB7	Q9Y5E2	793 aa		4.96	□□□□□ -1.62
RUFY3-215	ENST00000515479	RPS10-NUDT3	A0A1W2PQS6	291 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479		J3KTA2	159 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	CNTN5	O94779	1100 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	NFATC1	O95644	943 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	HSPA8	P11142	646 aa	Known RBP	4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	RFC4	P35249	363 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	SLC37A1	P57057	533 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	DEFB115	Q30KQ5	88 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	KIAA1755	Q5JYT7	1200 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	ASPHD1	Q5U4P2	390 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	ZNF324B	Q6AW86	544 aa	Predicted RBP	4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	CYB5R4	Q7L1T6	521 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	TXLNB	Q8N3L3	684 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	IQCF1	Q8N6M8	205 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	SRFBP1	Q8NEF9	429 aa	Known RBP	4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	NPIPB3	Q92617	1050 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	NEUROG1	Q92886	237 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	ZNF347	Q96SE7	839 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	EIF2A	Q9BY44	585 aa	Known RBP	4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	RGL1	Q9NZL6	768 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	FAM50B	Q9Y247	325 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	INSL5	Q9Y5Q6	135 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	ZNF831	Q5JPB2	1677 aa		4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	TNRC18	O15417	2968 aa	Predicted RBP	4.95	□□□□□ -1.62
RUFY3-215	ENST00000515479	DLEC1	Q9Y238	1755 aa		4.94	□□□□□ -1.62
RUFY3-215	ENST00000515479	FAM234B	A2RU67	622 aa		4.94	□□□□□ -1.62
RUFY3-215	ENST00000515479	APAF1	O14727	1248 aa		4.94	□□□□□ -1.62
RUFY3-215	ENST00000515479	KAT7	O95251	611 aa		4.94	□□□□□ -1.62
RUFY3-215	ENST00000515479	IFNA2	P01563	188 aa		4.94	□□□□□ -1.62
RUFY3-215	ENST00000515479	TGM2	P21980	687 aa		4.94	□□□□□ -1.62
RUFY3-215	ENST00000515479	MLH1	P40692	756 aa		4.94	□□□□□ -1.62
RUFY3-215	ENST00000515479	IFIT5	Q13325	482 aa	Known RBP	4.94	□□□□□ -1.62
RUFY3-215	ENST00000515479	CSHL1	Q14406	222 aa		4.94	□□□□□ -1.62
RUFY3-215	ENST00000515479	MAPKAPK3	Q16644	382 aa		4.94	□□□□□ -1.62
RUFY3-215	ENST00000515479	ARL13B	Q3SXY8	428 aa		4.94	□□□□□ -1.62
RUFY3-215	ENST00000515479	TTC39A	Q5SRH9	613 aa		4.94	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms