RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 TCAF2A6NFQ2 919 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 F5H5T6 163 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 H3BM21 787 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 TPP1O14773 563 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 CASC3O15234 703 aaKnown RBP11.23□□□□□ -0.61
DDX41-216ENST00000513562 AQP9O43315 295 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 STX10O60499 249 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 ZNF18P17022 549 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 RPL13P26373 211 aaKnown RBP11.23□□□□□ -0.61
DDX41-216ENST00000513562 YWHAEP62258 255 aaKnown RBP11.23□□□□□ -0.61
DDX41-216ENST00000513562 TLE1Q04724 770 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 CCDC15Q0P6D6 951 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 SRSF6Q13247 344 aaKnown RBP11.23□□□□□ -0.61
DDX41-216ENST00000513562 ADAM9Q13443 819 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 UBAP2LQ14157 1087 aaKnown RBP11.23□□□□□ -0.61
DDX41-216ENST00000513562 DRAP1Q14919 205 aaPredicted RBP11.23□□□□□ -0.61
DDX41-216ENST00000513562 DEFB133Q30KQ1 61 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 ZC3H12AQ5D1E8 599 aaKnown RBP11.23□□□□□ -0.61
DDX41-216ENST00000513562 TTC39BQ5VTQ0 682 aaPredicted RBP11.23□□□□□ -0.61
DDX41-216ENST00000513562 SEL1L3Q68CR1 1132 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 BEND5Q7L4P6 421 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 SH2D3CQ8N5H7 860 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 TFAP2BQ92481 460 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 LIN37Q96GY3 246 aaPredicted RBP11.23□□□□□ -0.61
DDX41-216ENST00000513562 PRMT1Q99873 361 aaKnown RBP11.23□□□□□ -0.61
DDX41-216ENST00000513562 BOCQ9BWV1 1114 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 KLF15Q9UIH9 416 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 HS3ST3A1Q9Y663 406 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 POM121BA6NF01 834 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 M0QYV0 167 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 KPNA3O00505 521 aaPredicted RBP11.22□□□□□ -0.61
DDX41-216ENST00000513562 PLD2O14939 933 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 MUSKO15146 869 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 IGLV3-25P01717 112 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 PAEPP09466 180 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 SLC5A2P31639 672 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 NUCB2P80303 420 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 EIF3IQ13347 325 aaKnown RBP11.22□□□□□ -0.61
DDX41-216ENST00000513562 SPIDRQ14159 915 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 TGIF1Q15583 401 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 CBWD6Q4V339 395 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 ZCWPW2Q504Y3 356 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 CBWD3Q5JTY5 395 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 CBWD5Q5RIA9 395 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 SYPL2Q5VXT5 272 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 C14orf80Q86SX3 495 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 TMIEQ8NEW7 156 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 NAT6Q93015 286 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 INTS4Q96HW7 963 aaKnown RBP11.22□□□□□ -0.61
DDX41-216ENST00000513562 PPP1R9BQ96SB3 815 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 CCDC3Q9BQI4 270 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 ZSWIM1Q9BR11 485 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 FEM1AQ9BSK4 669 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 MIS12Q9H081 205 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 SEPT3Q9UH03 358 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 PCDHA7Q9UN72 937 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 HS3ST2Q9Y278 367 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 COQ4Q9Y3A0 265 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 OR51B4Q9Y5P0 310 aa11.22□□□□□ -0.61
DDX41-216ENST00000513562 NYNRINQ9P2P1 1898 aaKnown RBP11.21□□□□□ -0.61
DDX41-216ENST00000513562 KCNU1A8MYU2 1149 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 RNF103O00237 685 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 NTN3O00634 580 aaPredicted RBP11.21□□□□□ -0.61
DDX41-216ENST00000513562 RAD51BO15315 384 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 SART1O43290 800 aaKnown RBP11.21□□□□□ -0.61
DDX41-216ENST00000513562 BNIP3LO60238 219 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 PPFIA2O75334 1257 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 RHOBTB3O94955 611 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 PCDH8O95206 1070 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 MYL1P05976 194 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 LIPCP11150 499 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 JUNDP17535 347 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 CHRNA3P32297 505 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 RABIFP47224 123 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 ME1P48163 572 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 RPL34P49207 117 aaKnown RBP11.21□□□□□ -0.61
DDX41-216ENST00000513562 RPIAP49247 311 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 C1QBPQ07021 282 aaKnown RBP11.21□□□□□ -0.61
DDX41-216ENST00000513562 EIF4EBP2Q13542 120 aaPredicted RBP11.21□□□□□ -0.61
DDX41-216ENST00000513562 FGL2Q14314 439 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 STILQ15468 1287 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 CNGA2Q16280 664 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 TBR1Q16650 682 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 RABGAP1LQ5R372 815 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 TPRG1LQ5T0D9 272 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 ERICH6BQ5W0A0 696 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 KIAA1161Q6NSJ0 714 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 ERN2Q76MJ5 926 aaKnown RBP11.21□□□□□ -0.61
DDX41-216ENST00000513562 SLC35F3Q8IY50 421 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 GUF1Q8N442 669 aaKnown RBP11.21□□□□□ -0.61
DDX41-216ENST00000513562 FBXO39Q8N4B4 442 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 OR52K2Q8NGK3 314 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 OR2A12Q8NGT7 310 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 LMX1AQ8TE12 382 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 FAM149B1Q96BN6 582 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 CCDC114Q96M63 670 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 IL12RB2Q99665 862 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 TRIM62Q9BVG3 475 aa11.21□□□□□ -0.61
DDX41-216ENST00000513562 SRRTQ9BXP5 876 aaKnown RBP11.21□□□□□ -0.61
DDX41-216ENST00000513562 HDAC8Q9BY41 377 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms