RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 SNX13Q9Y5W8 968 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 TRIM64CA6NLI5 447 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 FAM25EA8MYX2 175 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 H0Y3Z8 333 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 SCAMP3O14828 347 aaKnown RBP9.06□□□□□ -0.96
VCAN-208ENST00000512590 SMNDC1O75940 238 aaKnown RBP eCLIP9.06□□□□□ -0.96
VCAN-208ENST00000512590 MT-ND5P03915 603 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 FESP07332 822 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 IL13P35225 146 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 IST1P53990 364 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 CUL2Q13617 745 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 TSNQ15631 228 aaKnown RBP9.06□□□□□ -0.96
VCAN-208ENST00000512590 GFOD2Q3B7J2 385 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 KHDC1LQ5JSQ8 128 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 APLFQ8IW19 511 aaPredicted RBP9.06□□□□□ -0.96
VCAN-208ENST00000512590 ACDQ96AP0 544 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 NARS2Q96I59 477 aaKnown RBP9.06□□□□□ -0.96
VCAN-208ENST00000512590 DNAJC28Q9NX36 388 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 TBC1D14Q9P2M4 693 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 DNAJC5BQ9UF47 199 aa9.06□□□□□ -0.96
VCAN-208ENST00000512590 ERI2A8K979 691 aaKnown RBP9.05□□□□□ -0.96
VCAN-208ENST00000512590 CCDC188H7C350 402 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 QSOX1O00391 747 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 DLX3O60479 287 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 RTN2O75298 545 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 SEC22BO75396 215 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 PGK1P00558 417 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 GSTT2P0CG29 244 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 GSTT2BP0CG30 244 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 BCAP31P51572 246 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 HERVK_113P62684 666 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 EPS8Q12929 822 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 TRAP1Q12931 704 aaKnown RBP9.05□□□□□ -0.96
VCAN-208ENST00000512590 NFYCQ13952 458 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 SQLEQ14534 574 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 PLGLAQ15195 96 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 NOMO2Q5JPE7 1267 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 ZDHHC20Q5W0Z9 365 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 MPZL3Q6UWV2 235 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 GALNTL5Q7Z4T8 443 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 SLC35F6Q8N357 371 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 MAB21L3Q8N8X9 362 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 FBXW5Q969U6 566 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 EME1Q96AY2 570 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 FEM1CQ96JP0 617 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 SERINC1Q9NRX5 453 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 MBD2Q9UBB5 411 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 CKLFQ9UBR5 152 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 TAF6LQ9Y6J9 622 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 PPP1R3GB7ZBB8 358 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 ERAL1O75616 437 aaKnown RBP9.05□□□□□ -0.96
VCAN-208ENST00000512590 HLA-DRAP01903 254 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 COL6A1P12109 1028 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 MNDAP41218 407 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 NDUFA8P51970 172 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 SLC7A5Q01650 507 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 CAMK2DQ13557 499 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 MYBPC3Q14896 1274 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 CDC42EP5Q6NZY7 148 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 NUP54Q7Z3B4 507 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 GRAMD1CQ8IYS0 662 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 DEFB119Q8N690 84 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 ATL1Q8WXF7 558 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 ING5Q8WYH8 240 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 MR1Q95460 341 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 LENG9Q96B70 501 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 GANQ9H2C0 597 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 TRIM36Q9NQ86 728 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 TRMT13Q9NUP7 481 aaKnown RBP9.05□□□□□ -0.96
VCAN-208ENST00000512590 CMTM6Q9NX76 183 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 TMPRSS11EQ9UL52 423 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 GPC6Q9Y625 555 aaPredicted RBP9.05□□□□□ -0.96
VCAN-208ENST00000512590 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.05□□□□□ -0.96
VCAN-208ENST00000512590 LOC100653049A0A140TA62 436 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 GSC2O15499 205 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 RGS10O43665 173 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 DTNBO60941 627 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 KRT34O76011 436 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 LRATO95237 230 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 NDUFB10O96000 172 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 TMEM253P0C7T8 217 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 NT5EP21589 574 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 HSPA9P38646 679 aaKnown RBP9.05□□□□□ -0.96
VCAN-208ENST00000512590 NPTX2P47972 431 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 SULT2A1Q06520 285 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 MAD2L1BPQ15013 274 aaPredicted RBP9.05□□□□□ -0.96
VCAN-208ENST00000512590 SNRNP35Q16560 246 aaKnown RBP9.05□□□□□ -0.96
VCAN-208ENST00000512590 EML3Q32P44 896 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 OLFML2BQ68BL8 750 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 HJURPQ8NCD3 748 aaPredicted RBP9.05□□□□□ -0.96
VCAN-208ENST00000512590 HELQQ8TDG4 1101 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 EPYCQ99645 322 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 ENOPH1Q9UHY7 261 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 SH3BGRL2Q9UJC5 107 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 ASF1AQ9Y294 204 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 STK36Q9NRP7 1315 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 B4DGG1 531 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 TNFRSF10BO14763 440 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 DLGAP3O95886 979 aa9.05□□□□□ -0.96
VCAN-208ENST00000512590 ATP6V1B2P21281 511 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms