RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 GPR155Q7Z3F1 870 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 SPATS2Q86XZ4 545 aaKnown RBP21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 FAM114A1Q8IWE2 563 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 DCAF4L2Q8NA75 395 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 ZNF248Q8NDW4 579 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 CPXM1Q96SM3 734 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 LGMNQ99538 433 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 HS3ST4Q9Y661 456 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 APC2O95996 2303 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 A0A1W2PQU0 124 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 WNT9AO14904 365 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 ATXN7O15265 892 aaPredicted RBP21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 SLC31A1O15431 190 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 SDC3O75056 442 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 GRAP2O75791 330 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 GP1BAP07359 652 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 SLC20A2Q08357 652 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 PROX2Q3B8N5 592 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 POM121L1PQ3SYA9 428 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 KIAA1161Q6NSJ0 714 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 ZNF783Q6ZMS7 281 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 DCBLD1Q8N8Z6 715 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 TMEM35BQ8NCS4 154 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 ZNF397Q8NF99 534 aaPredicted RBP21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 SLC39A7Q92504 469 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 NLGN3Q9NZ94 848 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 IL36AQ9UHA7 158 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 IPO11Q9UI26 975 aaKnown RBP21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 RWDD2AQ9UIY3 292 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 SARDHQ9UL12 918 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 WDFY3Q8IZQ1 3526 aa21.54■■□□□ 1.04
SQSTM1-210ENST00000506042 SIGLEC6O43699 453 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 BRINP1O60477 761 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 SRCP12931 536 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 DGKAP23743 735 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 OR1E1P30953 314 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 MTIF2P46199 727 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 GEMIN4P57678 1058 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 PCBP4P57723 403 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 RPS21P63220 83 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 DEUP1Q05D60 604 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 TBC1D25Q3MII6 688 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 KDM7AQ6ZMT4 941 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 FAM183BPQ6ZVS7 135 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 ERN2Q76MJ5 926 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 PASD1Q8IV76 773 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 SHC3Q92529 594 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 GRAMD1AQ96CP6 724 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 FEM1CQ96JP0 617 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 ZNF578Q96N58 590 aaPredicted RBP21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 CRACR2AQ9BSW2 395 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 TKTL2Q9H0I9 626 aa21.53■■□□□ 1.04
SQSTM1-210ENST00000506042 MT-CO3P00414 261 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 SCNN1AP37088 669 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 SULT1E1P49888 294 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 NEK3P51956 506 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 INSM1Q01101 510 aaPredicted RBP21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 TAF5Q15542 800 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 C5orf22Q49AR2 442 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 OLFML1Q6UWY5 402 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 KANSL1Q7Z3B3 1105 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 TMEM145Q8NBT3 493 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 GLMNQ92990 594 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 ARHGEF26Q96DR7 871 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 ALG14Q96F25 216 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 C1orf74Q96LT6 269 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 HDAC8Q9BY41 377 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 CEP44Q9C0F1 390 aa21.52■■□□□ 1.04
SQSTM1-210ENST00000506042 FFAR2O15552 330 aa21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 ADCY5O95622 1261 aa21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 CKMT1AP12532 417 aa21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 NUMBP49757 651 aa21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 PITX1P78337 314 aaPredicted RBP21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 SGCGQ13326 291 aa21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 PIP5KL1Q5T9C9 394 aa21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 PTAR1Q7Z6K3 402 aaPredicted RBP21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 PGAP3Q96FM1 320 aaPredicted RBP21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 PRORYQ9H606 182 aa21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 DNAJC28Q9NX36 388 aa21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 VPS51Q9UID3 782 aa21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 OR51B4Q9Y5P0 310 aa21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 HS3ST3A1Q9Y663 406 aa21.51■■□□□ 1.03
SQSTM1-210ENST00000506042 ITPR1Q14643 2758 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 PIAS2O75928 621 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 PRLRP16471 622 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 ITPKBP27987 946 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 CXCR3P49682 368 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 RNASE9P60153 205 aaKnown RBP21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 C22orf39Q6P5X5 142 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 PCDH20Q8N6Y1 951 aaKnown RBP21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 OR2A12Q8NGT7 310 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 TPCN2Q8NHX9 752 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 GRIN3AQ8TCU5 1115 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 BTN2A2Q8WVV5 523 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 CCDC97Q96F63 343 aaPredicted RBP21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 MYOCQ99972 504 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 RETREG1Q9H6L5 497 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 THSD1Q9NS62 852 aa21.5■■□□□ 1.03
SQSTM1-210ENST00000506042 ARHGEF38Q9NXL2 777 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms