RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 RASA2Q15283 850 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 GSTA3Q16772 222 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 SDHAF4Q5VUM1 108 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 PLPP4Q5VZY2 271 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 PRR23CQ6ZRP0 262 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 PTF1AQ7RTS3 328 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 GPSM1Q86YR5 675 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 ANKRD52Q8NB46 1076 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 TM6SF2Q9BZW4 377 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 FAM105AQ9NUU6 356 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 GPSM3Q9Y4H4 160 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 GJB1P08034 283 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 IL2P60568 153 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 NAB1Q13506 487 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 TCEA2Q15560 299 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 DET1Q7L5Y6 550 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 TTC7BQ86TV6 843 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 BBS2Q9BXC9 721 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 RHBGQ9H310 441 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 SEMA4AQ9H3S1 761 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 ASB8Q9H765 288 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 KLHL20Q9Y2M5 609 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 ANKDD1BA6NHY2 528 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 FAM220BPB1ANY3 271 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 NT5C1B-RDH14C9J2C7 533 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 RIPK2O43353 540 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 SH3BGRLO75368 114 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 DLGAP3O95886 979 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 CNPP09543 421 aaKnown RBP13.33□□□□□ -0.28
PTPRF-215ENST00000496447 SSTR1P30872 391 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 CASP5P51878 434 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 ZNF143P52747 638 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-215ENST00000496447 SMAD3P84022 425 aaKnown RBP13.33□□□□□ -0.28
PTPRF-215ENST00000496447 DPYSL3Q14195 570 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 COLGALT2Q8IYK4 626 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 CLYBLQ8N0X4 340 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 ATG16L2Q8NAA4 619 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 KAT5Q92993 513 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 CXorf40BQ96DE9 158 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 COMMD8Q9NX08 183 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 ENTPD4Q9Y227 616 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 STARD13Q9Y3M8 1113 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 A0A087X1B8 175 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 B4GALT5O43286 388 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 GRM5P41594 1212 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 PKN2Q16513 984 aaKnown RBP13.33□□□□□ -0.28
PTPRF-215ENST00000496447 OMA1Q96E52 524 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 SLC28A3Q9HAS3 691 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 VTI1BQ9UEU0 232 aa13.33□□□□□ -0.28
PTPRF-215ENST00000496447 CES2O00748 559 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 GUCY1B2O75343 617 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 GLI1P08151 1106 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 HPCAL1P37235 193 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 RPL21P46778 160 aaKnown RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 GJA8P48165 433 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 DDR2Q16832 855 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 DUSP28Q4G0W2 176 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 CWF19L1Q69YN2 538 aaKnown RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 B3GNT6Q6ZMB0 384 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 MTDHQ86UE4 582 aaKnown RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 PSTKQ8IV42 348 aaKnown RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 REM2Q8IYK8 340 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 CYP4Z2PQ8N1L4 340 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 SPPL2AQ8TCT8 520 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 AENQ8WTP8 325 aaKnown RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 ATXN2LQ8WWM7 1075 aaKnown RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 SLURP2P0DP57 97 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 CLK2P49760 499 aaKnown RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 FIG4Q92562 907 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 SEMA4DQ92854 862 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 POMKQ9H5K3 350 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 ETNK2Q9NVF9 386 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 GNPTGQ9UJJ9 305 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 PTCH2Q9Y6C5 1203 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 RGS14O43566 566 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 CALCAP01258 141 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 ENO2P09104 434 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 PSMB4P28070 264 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 NOS3P29474 1203 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 PCID2Q5JVF3 399 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 FAM46CQ5VWP2 391 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 RIPOR1Q6ZS17 1223 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 DPP10Q8N608 796 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 EPS8L1Q8TE68 723 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 TRPC4APQ8TEL6 797 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 HGH1Q9BTY7 390 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 DKK3Q9UBP4 350 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 ZNHIT2Q9UHR6 403 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 OR6C75A6NL08 312 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 PDE2AO00408 941 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 MAMLD1Q13495 774 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 GNA13Q14344 377 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 LRRC74BQ6ZQY2 392 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 METTL3Q86U44 580 aaKnown RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 APOPT1Q96IL0 206 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 GAS2L1Q99501 681 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-215ENST00000496447 ZFYVE1Q9HBF4 777 aa13.32□□□□□ -0.28
PTPRF-215ENST00000496447 BTBD19C9JJ37 291 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 CDC25CP30307 473 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 ABL2P42684 1182 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms