RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 ISL2Q96A47 359 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 ADAM2Q99965 735 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 SLC39A8Q9C0K1 460 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 TASP1Q9H6P5 420 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 COG4Q9H9E3 785 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 NDFIP2Q9NV92 336 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 NMRK1Q9NWW6 199 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 DNAJC28Q9NX36 388 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 SLC7A8Q9UHI5 535 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 WASF2Q9Y6W5 498 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 ZNF236Q9UL36 1845 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 MANSC4A6NHS7 340 aaPredicted RBP11.4□□□□□ -0.58
CHMP3-209ENST00000494623 PDHA1P08559 390 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 OR4Q2P0C623 313 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 ATP6V1C1P21283 382 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 GLRBP48167 497 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 RALGPS1Q5JS13 557 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 NET1Q7Z628 596 aaPredicted RBP11.4□□□□□ -0.58
CHMP3-209ENST00000494623 LINC00523Q86TU6 105 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 SLC25A41Q8N5S1 370 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 SHKBP1Q8TBC3 707 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 SCG3Q8WXD2 468 aaKnown RBP11.4□□□□□ -0.58
CHMP3-209ENST00000494623 RSPH1Q8WYR4 309 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 DPF3Q92784 378 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 MIEF2Q96C03 454 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 SCYL1Q96KG9 808 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 FCRL2Q96LA5 508 aaPredicted RBP11.4□□□□□ -0.58
CHMP3-209ENST00000494623 PANX3Q96QZ0 392 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 TBL1YQ9BQ87 522 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 STN1Q9H668 368 aaKnown RBP11.4□□□□□ -0.58
CHMP3-209ENST00000494623 SPC25Q9HBM1 224 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 STX18Q9P2W9 335 aaKnown RBP11.4□□□□□ -0.58
CHMP3-209ENST00000494623 RUVBL2Q9Y230 463 aaKnown RBP11.4□□□□□ -0.58
CHMP3-209ENST00000494623 AAR2Q9Y312 384 aaKnown RBP11.4□□□□□ -0.58
CHMP3-209ENST00000494623 PCDHB12Q9Y5F1 795 aa11.4□□□□□ -0.58
CHMP3-209ENST00000494623 PSMD3O43242 534 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 TRIM13O60858 407 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 VAPBO95292 243 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 IGHA2P01877 340 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 AHSGP02765 367 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 CCNCP24863 283 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 CPOXP36551 454 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 SLC5A3P53794 718 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 CSE1LP55060 971 aaKnown RBP11.39□□□□□ -0.59
CHMP3-209ENST00000494623 TSPY1Q01534 308 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 CTBP1Q13363 440 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 FRG1Q14331 258 aaKnown RBP11.39□□□□□ -0.59
CHMP3-209ENST00000494623 LRRC74BQ6ZQY2 392 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 CLEC14AQ86T13 490 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 IFNL1Q8IU54 200 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 SPATA2LQ8IUW3 424 aaPredicted RBP11.39□□□□□ -0.59
CHMP3-209ENST00000494623 SCN4BQ8IWT1 228 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ARHGAP12Q8IWW6 846 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 OR6Y1Q8NGX8 325 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 CASP10Q92851 521 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ZNF333Q96JL9 665 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 PPP1R36Q96LQ0 422 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 FICDQ9BVA6 458 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 KIFC1Q9BW19 673 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 C1orf21Q9H246 121 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ATXN3LQ9H3M9 355 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ARHGEF38Q9NXL2 777 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 MPP6Q9NZW5 540 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 CDY1Q9Y6F8 540 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 A0A0U1RQF3 1178 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 E9PBE3 544 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 KLHL41O60662 606 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ZNF623O75123 536 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 PMPCBO75439 489 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 LUC7L3O95232 432 aaKnown RBP11.39□□□□□ -0.59
CHMP3-209ENST00000494623 TUBP50607 506 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 COPAP53621 1224 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 TUSC3Q13454 348 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ITGA7Q13683 1181 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ANO4Q32M45 955 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 SLC9B1Q4ZJI4 515 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 PCID2Q5JVF3 399 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ESRP1Q6NXG1 681 aaKnown RBP11.39□□□□□ -0.59
CHMP3-209ENST00000494623 PKN3Q6P5Z2 889 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ZC3HC1Q86WB0 502 aaKnown RBP11.39□□□□□ -0.59
CHMP3-209ENST00000494623 SLC41A1Q8IVJ1 513 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 DENND6AQ8IWF6 608 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 MICAL1Q8TDZ2 1067 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 SREK1Q8WXA9 508 aaKnown RBP11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ZNF419Q96HQ0 510 aaPredicted RBP11.39□□□□□ -0.59
CHMP3-209ENST00000494623 TSGA13Q96PP4 275 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 PKMYT1Q99640 499 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 GATA5Q9BWX5 397 aaPredicted RBP11.39□□□□□ -0.59
CHMP3-209ENST00000494623 CDH19Q9H159 772 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 FAM96AQ9H5X1 160 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 GLOD4Q9HC38 313 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ZFYVE28Q9HCC9 887 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 ABCC13Q9NSE7 274 aa11.39□□□□□ -0.59
CHMP3-209ENST00000494623 RBM22Q9NW64 420 aaKnown RBP eCLIP11.39□□□□□ -0.59
CHMP3-209ENST00000494623 A0A088AWK7 358 aa11.38□□□□□ -0.59
CHMP3-209ENST00000494623 F8W8V4 182 aa11.38□□□□□ -0.59
CHMP3-209ENST00000494623 TK2O00142 265 aa11.38□□□□□ -0.59
CHMP3-209ENST00000494623 AP3B1O00203 1094 aa11.38□□□□□ -0.59
CHMP3-209ENST00000494623 IRAK2O43187 625 aa11.38□□□□□ -0.59
CHMP3-209ENST00000494623 DCXO43602 365 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms