RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 DACT1Q9NYF0 836 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 NDUFAF4Q9P032 175 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 PRDM4Q9UKN5 801 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 UTS2RQ9UKP6 389 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 AGO2Q9UKV8 859 aaKnown RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 COG5Q9UP83 839 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 CNTN6Q9UQ52 1028 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 ZBTB1Q9Y2K1 713 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 ZSCAN21Q9Y5A6 473 aaPredicted RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 NRAPQ86VF7 1730 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 LMTK2Q8IWU2 1503 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 TROQ12816 1431 aaPredicted RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 VIRMAQ69YN4 1812 aaKnown RBP2.4□□□□□ -2.02
HMGB1-208ENST00000490788 NALCNQ8IZF0 1738 aa2.4□□□□□ -2.02
HMGB1-208ENST00000490788 LOC105369274A0A096LPK9 316 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 KIR2DS5A0A0G2JLQ3 304 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 LOC102723532A0A0G2JNH3 316 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 hCG_1642624A0A1W2PR95 340 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 FAM90A10PA6NDY2 464 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 HMX3A6NHT5 357 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 MBD3L5A6NJ08 208 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 H0YGN5 161 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 KIR2DS3K7RE56 304 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 SYT5O00445 386 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 TRIM38O00635 465 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 IKBKBO14920 756 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 DHHO43323 396 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 CCNT1O60563 726 aaKnown RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 NDUFB8O95169 186 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 OAZ2O95190 189 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 CSTBP04080 98 aaKnown RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 LCKP06239 509 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 CYP3A4P08684 503 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 RFPL3SP0C7P2 107 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 GYS1P13807 737 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 TBXAS1P24557 533 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 SERPINB3P29508 390 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 RCAN1P53805 252 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 PMPCAQ10713 525 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 FHL1Q13642 323 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 TRIM14Q14142 442 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 INPP5JQ15735 1006 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 SMTNL2Q2TAL5 461 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 MIDNQ504T8 468 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 ALG10Q5BKT4 473 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 ALG10BQ5I7T1 473 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 TTC39AQ5SRH9 613 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 AWAT2Q6E213 333 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 ZNF474Q6S9Z5 364 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 RFX8Q6ZV50 586 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 IRF2BP2Q7Z5L9 587 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 TECPR1Q7Z6L1 1165 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 KLBQ86Z14 1044 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 SLC44A2Q8IWA5 706 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 DDIASQ8IXT1 998 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 ADGRF3Q8IZF5 1079 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 OR4N4Q8N0Y3 316 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 TCP11L2Q8N4U5 519 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 DEFB123Q8N688 67 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 ARL14EPQ8N8R7 260 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 ENAHQ8N8S7 591 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 OR52N4Q8NGI2 321 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 POF1BQ8WVV4 589 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 TRIM63Q969Q1 353 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 EID2BQ96D98 161 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 ZNF419Q96HQ0 510 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 CLMNQ96JQ2 1002 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 ZNF830Q96NB3 372 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 PIGSQ96S52 555 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 ZNF347Q96SE7 839 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 RMDN3Q96TC7 470 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 PIMREGQ9BSJ6 248 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 KATNAL1Q9BW62 490 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 SORBS1Q9BX66 1292 aaKnown RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 MLXIPLQ9NP71 852 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 SEMA4BQ9NPR2 832 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 CHST12Q9NRB3 414 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 THSD1Q9NS62 852 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 TMLHEQ9NVH6 421 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 MSRB1Q9NZV6 116 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 C19orf53Q9UNZ5 99 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 LAMP3Q9UQV4 416 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 PCDHA10Q9Y5I2 948 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 COPG1Q9Y678 874 aaKnown RBP2.4□□□□□ -2.03
HMGB1-208ENST00000490788 USP6P35125 1406 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 SSH2Q76I76 1423 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 PTPRUQ92729 1446 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 RIMS2Q9UQ26 1411 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 CASP8AP2Q9UKL3 1982 aa2.4□□□□□ -2.03
HMGB1-208ENST00000490788 PLEKHH2Q8IVE3 1493 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 CACNA1GO43497 2377 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 MTUS2Q5JR59 1369 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 CYP3A7-CYP3A51PA0A087WV96 503 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 TRBV5-3A0A0A0MS03 114 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 LY6G6EA0A0G2JKS1 128 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 TMEM272A0A1B0GTI8 110 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 GLTPD2A6NH11 291 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 AGAP5A6NIR3 686 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 CD8B2A6NJW9 211 aa2.39□□□□□ -2.03
HMGB1-208ENST00000490788 SLC38A8A6NNN8 435 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms