RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 FRG2BQ96QU4 278 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 RTKNQ9BST9 563 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 KATNAL1Q9BW62 490 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 IL25Q9H293 177 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 ABHD16BQ9H3Z7 469 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 DDX31Q9H8H2 851 aaKnown RBP3.33□□□□□ -1.88
CPSF3-205ENST00000489629 OBP2BQ9NPH6 170 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 DAPP1Q9UN19 280 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 RAP2CQ9Y3L5 183 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.32□□□□□ -1.88
CPSF3-205ENST00000489629 SAC3D1A6NKF1 404 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 LGALS16A8MUM7 142 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 EFCAB8A8MWE9 144 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 FCGR2AP12318 317 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 PCP4P48539 62 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 CLCN5P51795 746 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 NUDT6P53370 316 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 PNLIPRP1P54315 467 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 BTKQ06187 659 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 PICALMQ13492 652 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 STARD3Q14849 445 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 ZACNQ401N2 412 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 SYTL3Q4VX76 610 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 GFI1BQ5VTD9 330 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 NFRKBQ6P4R8 1299 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 GSG1LQ6UXU4 331 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 CREB3L2Q70SY1 520 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 RNF144BQ7Z419 303 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 ZNF329Q86UD4 541 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 TRIM74Q86UV6 250 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 TRIM73Q86UV7 250 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 SCN4BQ8IWT1 228 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 ZDHHC23Q8IYP9 409 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 CEP76Q8TAP6 659 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 C2CD4CQ8TF44 421 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 FAM216AQ8WUB2 273 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 TNIP3Q96KP6 325 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 C1QTNF4Q9BXJ3 329 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 ARNT2Q9HBZ2 717 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 CHST12Q9NRB3 414 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 CDC23Q9UJX2 597 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 ICAM5Q9UMF0 924 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 OSGIN2Q9Y236 505 aa3.32□□□□□ -1.88
CPSF3-205ENST00000489629 PPM1GO15355 546 aaPredicted RBP3.31□□□□□ -1.88
CPSF3-205ENST00000489629 FFAR2O15552 330 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 LDB3O75112 727 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 CAND2O75155 1236 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 CLDN7O95471 211 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 LYL1P12980 280 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 NAGAP17050 411 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 BNC1Q01954 994 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 EEF1A2Q05639 463 aaKnown RBP3.31□□□□□ -1.88
CPSF3-205ENST00000489629 KRTAP27-1Q3LI81 207 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 KRTAP24-1Q3LI83 254 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 GALNTL6Q49A17 601 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 FAM76BQ5HYJ3 339 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 ATPAF1Q5TC12 328 aaPredicted RBP3.31□□□□□ -1.88
CPSF3-205ENST00000489629 SLC44A2Q8IWA5 706 aaPredicted RBP3.31□□□□□ -1.88
CPSF3-205ENST00000489629 FAM186BQ8IYM0 893 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 VPS52Q8N1B4 723 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 TEX45Q8NA69 505 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 OR14A16Q8NHC5 309 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 SCAMP5Q8TAC9 235 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 SLC35F5Q8WV83 523 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 FAR1Q8WVX9 515 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 TMED6Q8WW62 240 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 ARRDC3Q96B67 414 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 RTP4Q96DX8 246 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.31□□□□□ -1.88
CPSF3-205ENST00000489629 PRDM8Q9NQV8 689 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 SEL1LQ9UBV2 794 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 CDH22Q9UJ99 828 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 SLC25A13Q9UJS0 675 aa3.31□□□□□ -1.88
CPSF3-205ENST00000489629 C19orf53Q9UNZ5 99 aaPredicted RBP3.31□□□□□ -1.88
CPSF3-205ENST00000489629 IGLV5-52A0A0A0MRZ9 124 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 C17orf102A2RUQ5 167 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 TMEM247A6NEH6 219 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 SLC16A5O15375 505 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 RNMTO43148 476 aaKnown RBP3.3□□□□□ -1.88
CPSF3-205ENST00000489629 ASAP2O43150 1006 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 ACTL6BO94805 426 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 CAMTA2O94983 1202 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 DDAH2O95865 285 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 PLGP00747 810 aaPredicted RBP3.3□□□□□ -1.88
CPSF3-205ENST00000489629 ITGA2BP08514 1039 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 ENO3P13929 434 aaPredicted RBP3.3□□□□□ -1.88
CPSF3-205ENST00000489629 GSTM2P28161 218 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 AVPR2P30518 371 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 CDH12P55289 794 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 GALNT1Q10472 559 aaPredicted RBP3.3□□□□□ -1.88
CPSF3-205ENST00000489629 GRSF1Q12849 480 aaKnown RBP eCLIP3.3□□□□□ -1.88
CPSF3-205ENST00000489629 ALKBH1Q13686 389 aaKnown RBP3.3□□□□□ -1.88
CPSF3-205ENST00000489629 PLCB4Q15147 1175 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 PFKFB4Q16877 469 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 KIF19Q2TAC6 998 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 GXYLT1Q4G148 440 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 H1FNTQ75WM6 255 aaPredicted RBP3.3□□□□□ -1.88
CPSF3-205ENST00000489629 RAB11FIP2Q7L804 512 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 SERPINA11Q86U17 422 aa3.3□□□□□ -1.88
CPSF3-205ENST00000489629 FIZ1Q96SL8 496 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms