RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LCA5LO95447 670 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 ATP5F1P24539 256 aaPredicted RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 GSTA3Q16772 222 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 GPSM1Q86YR5 675 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 PCSK9Q8NBP7 692 aaKnown RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 TPD52L3Q96J77 140 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 P2RX7Q99572 595 aaKnown RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 SEMA4BQ9NPR2 832 aaPredicted RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 CXCL11O14625 94 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 ZMPSTE24O75844 475 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 ABCB1P08183 1280 aaPredicted RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 DCTN2Q13561 401 aaKnown RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 STARD3Q14849 445 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 ARSHQ5FYA8 562 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 POLR1EQ9GZS1 481 aaKnown RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 PTGES3LE9PB15 166 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 RECQL4O94761 1208 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 ALDH2P05091 517 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 GABRB2P47870 512 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 INAQ16352 499 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 RP9Q8TA86 221 aaKnown RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 MED8Q96G25 268 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 MRPS26Q9BYN8 205 aaKnown RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 ERVK-5Q9HDB9 667 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 ABCC13Q9NSE7 274 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 URODP06132 367 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 SNRPB2P08579 225 aaKnown RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 VCLP18206 1134 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 CYP2C18P33260 490 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 ISLR2Q6UXK2 745 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 LGI2Q8N0V4 545 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 HSFY1Q96LI6 401 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 UMODL1Q5DID0 1318 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 TSC22D2O75157 780 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 ANXA6P08133 673 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 PTPN1P18031 435 aaKnown RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 PPP2R1BP30154 601 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 PIK3CGP48736 1102 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 PSME3P61289 254 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 RSBN1Q5VWQ0 802 aaPredicted RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 TYW3Q6IPR3 259 aaKnown RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 MAN1C1Q9NR34 630 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 INVSQ9Y283 1065 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 MTF2Q9Y483 593 aaPredicted RBP16.67■□□□□ 0.26
COL7A1-210ENST00000487017 SNX8Q9Y5X2 465 aa16.67■□□□□ 0.26
COL7A1-210ENST00000487017 RTN3O95197 1032 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 TALDO1P37837 337 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 C8orf59Q8N0T1 100 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 DEPDC7Q96QD5 511 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 MRIQ9BWK5 157 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 AHSPQ9NZD4 102 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 TRIM38O00635 465 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 LGALS2P05162 132 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 ITGA2BP08514 1039 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 BDNFP23560 247 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 HOXA10P31260 410 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 TTKP33981 857 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 HGSNATQ68CP4 663 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 CASP12Q6UXS9 341 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 MARK2Q7KZI7 788 aaKnown RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 CROCCP3Q8IVE0 287 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 ACO2Q99798 780 aaKnown RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 UBA2Q9UBT2 640 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 RAP2CQ9Y3L5 183 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 A0A1W2PPM1 405 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 TCRBV9S1A1TA0A576 114 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 MAFO75444 373 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 KCNH1O95259 989 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 CCDC166P0CW27 439 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 S100A3P33764 101 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 PFKFB4Q16877 469 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 TRIM71Q2Q1W2 868 aaKnown RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 USP39Q53GS9 565 aaKnown RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 TTC7BQ86TV6 843 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 ALYREFQ86V81 257 aaKnown RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 STAG3L4Q8TBR4 150 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 UCMAQ8WVF2 138 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 MFSD14AQ96MC6 490 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 SPAG4Q9NPE6 437 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 SHPRHQ149N8 1683 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 NDUFB5O43674 189 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 ASNA1O43681 348 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 OR56A5P0C7T3 313 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 TNFSF9P41273 254 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 GRIA3P42263 894 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 EPS8Q12929 822 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 GRIK3Q13003 919 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 BFSP2Q13515 415 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 RDH11Q8TC12 318 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 MTG1Q9BT17 334 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 OPTCQ9UBM4 332 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 TRPC4Q9UBN4 977 aa16.66■□□□□ 0.26
COL7A1-210ENST00000487017 TNPO3Q9Y5L0 923 aaKnown RBP16.66■□□□□ 0.26
COL7A1-210ENST00000487017 TSPAN3O60637 253 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 NFKB1P19838 968 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 IL2P60568 153 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 DDR1Q08345 913 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 TTC27Q6P3X3 843 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 C12orf56Q8IXR9 622 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 ULK2Q8IYT8 1036 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms