RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 CADM3Q8N126 398 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 DPP10Q8N608 796 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 HORMAD2Q8N7B1 307 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 CLEC18CQ8NCF0 446 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 NUDCD2Q8WVJ2 157 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 APOLD1Q96LR9 279 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 DCLK3Q9C098 648 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.24□□□□□ -1.73
VPS41-213ENST00000485955 TAF1DQ9H5J8 278 aaPredicted RBP4.24□□□□□ -1.73
VPS41-213ENST00000485955 WWOXQ9NZC7 414 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 SRP68Q9UHB9 627 aaKnown RBP4.24□□□□□ -1.73
VPS41-213ENST00000485955 MYO6Q9UM54 1294 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 CNTNAP2Q9UHC6 1331 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 C17orf100A8MU93 164 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 HNRNPRO43390 633 aaKnown RBP4.23□□□□□ -1.73
VPS41-213ENST00000485955 KRT38O76015 456 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 TMCC1O94876 653 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 HOXC6P09630 235 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 ARSAP15289 507 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 ZP1P60852 638 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 CRYZQ08257 329 aaKnown RBP4.23□□□□□ -1.73
VPS41-213ENST00000485955 FOXO1Q12778 655 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 CHAF1AQ13111 956 aaPredicted RBP4.23□□□□□ -1.73
VPS41-213ENST00000485955 TIGD6Q17RP2 521 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 GXYLT1Q4G148 440 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 ZNF324BQ6AW86 544 aaPredicted RBP4.23□□□□□ -1.73
VPS41-213ENST00000485955 CCDC174Q6PII3 467 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 MYLK4Q86YV6 388 aaPredicted RBP4.23□□□□□ -1.73
VPS41-213ENST00000485955 CEP76Q8TAP6 659 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 ADAMTS14Q8WXS8 1223 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 KLHL31Q9H511 634 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 RMI1Q9H9A7 625 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 CDH22Q9UJ99 828 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 OSGIN2Q9Y236 505 aa4.23□□□□□ -1.73
VPS41-213ENST00000485955 TARSL2A2RTX5 802 aaKnown RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 DDTLA6NHG4 134 aaPredicted RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 PRR23D1E9PI22 279 aaPredicted RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 HSPB6O14558 160 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 SYN3O14994 580 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 DDAH2O95865 285 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 PRR23D2P0DMB1 279 aaPredicted RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 CYP4B1P13584 511 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 VEGFAP15692 232 aaPredicted RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 PRKCHP24723 683 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 CST5P28325 142 aaPredicted RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 HOXD3P31249 432 aaPredicted RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 AVPR1AP37288 418 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 ENTPD1P49961 510 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 CUL4BQ13620 913 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 BLMHQ13867 455 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 MORC3Q14149 939 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 SMAD1Q15797 465 aaKnown RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 RBM23Q86U06 439 aaKnown RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 BRSK2Q8IWQ3 736 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 ELP5Q8TE02 316 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 HDAC7Q8WUI4 952 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 FAR1Q8WVX9 515 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 MED30Q96HR3 178 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 MPHOSPH6Q99547 160 aaKnown RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 MEIS3Q99687 375 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 CADM1Q9BY67 442 aaKnown RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 CATSPERBQ9H7T0 1116 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 TLR8Q9NR97 1041 aaKnown RBP4.22□□□□□ -1.73
VPS41-213ENST00000485955 THAP1Q9NVV9 213 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 UPB1Q9UBR1 384 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 RAI2Q9Y5P3 530 aa4.22□□□□□ -1.73
VPS41-213ENST00000485955 LDB2O43679 373 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 LIASO43766 372 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 PAPSS2O95340 614 aaPredicted RBP4.21□□□□□ -1.74
VPS41-213ENST00000485955 CSF1P09603 554 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 THPOP40225 353 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 PDLIM4P50479 330 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 MVDP53602 400 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 DSCR9P59020 149 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 EGR4Q05215 589 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 HNF4GQ14541 408 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 DNTTIP2Q5QJE6 756 aaKnown RBP4.21□□□□□ -1.74
VPS41-213ENST00000485955 OTUD1Q5VV17 481 aaPredicted RBP4.21□□□□□ -1.74
VPS41-213ENST00000485955 PDXDC1Q6P996 788 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 GALNT7Q86SF2 657 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 DCP1BQ8IZD4 617 aaKnown RBP4.21□□□□□ -1.74
VPS41-213ENST00000485955 SCAIQ8N9R8 606 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 FSIP1Q8NA03 581 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 OR6Y1Q8NGX8 325 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 BICD2Q8TD16 824 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 PHF21BQ96EK2 531 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 KTI12Q96EK9 354 aaPredicted RBP4.21□□□□□ -1.74
VPS41-213ENST00000485955 G6PC2Q9NQR9 355 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 SELENONQ9NZV5 590 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 FZD10Q9ULW2 581 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 ICKQ9UPZ9 632 aa4.21□□□□□ -1.74
VPS41-213ENST00000485955 PRSS44E7EML9 344 aa4.2□□□□□ -1.74
VPS41-213ENST00000485955 MS4A18H0YCH9 400 aa4.2□□□□□ -1.74
VPS41-213ENST00000485955 GNLYP22749 145 aa4.2□□□□□ -1.74
VPS41-213ENST00000485955 RPS6KA3P51812 740 aa4.2□□□□□ -1.74
VPS41-213ENST00000485955 RBM5P52756 815 aaKnown RBP eCLIP4.2□□□□□ -1.74
VPS41-213ENST00000485955 KEAP1Q14145 624 aa4.2□□□□□ -1.74
VPS41-213ENST00000485955 BRD3Q15059 726 aa4.2□□□□□ -1.74
VPS41-213ENST00000485955 ASIC2Q16515 512 aa4.2□□□□□ -1.74
VPS41-213ENST00000485955 ZNF284Q2VY69 593 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms