RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 DCAF12L1Q5VU92 463 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 DAB2IPQ5VWQ8 1189 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 SLC23A3Q6PIS1 610 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 CREG2Q8IUH2 290 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 TMEFF1Q8IYR6 380 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 MNS1Q8NEH6 495 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 OR2T3Q8NH03 318 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 ADAM32Q8TC27 787 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 ACTRT1Q8TDG2 376 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 COG1Q8WTW3 980 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 PIGKQ92643 395 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 SIPA1Q96FS4 1042 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 PRICKLE1Q96MT3 831 aaPredicted RBP17.47■□□□□ 0.39
VIM-205ENST00000485947 NAP1L3Q99457 506 aaPredicted RBP17.47■□□□□ 0.39
VIM-205ENST00000485947 NUSAP1Q9BXS6 441 aaKnown RBP17.47■□□□□ 0.39
VIM-205ENST00000485947 MKRN2Q9H000 416 aaKnown RBP17.47■□□□□ 0.39
VIM-205ENST00000485947 FAM204AQ9H8W3 233 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 DDIT4Q9NX09 232 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 SUSD2Q9UGT4 822 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 SCML1Q9UN30 329 aa17.47■□□□□ 0.39
VIM-205ENST00000485947 M0QYT0 321 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 ZNF185O15231 689 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 CEP104O60308 925 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 ZRANB2O95218 330 aaKnown RBP eCLIP17.46■□□□□ 0.39
VIM-205ENST00000485947 SRPRAP08240 638 aaKnown RBP17.46■□□□□ 0.39
VIM-205ENST00000485947 ACADMP11310 421 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 PTGER3P43115 390 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 SGSHP51688 502 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 COPS2P61201 443 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 ST8SIA6P61647 398 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 DEUP1Q05D60 604 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 SFSWAPQ12872 951 aaKnown RBP17.46■□□□□ 0.39
VIM-205ENST00000485947 PTPRNQ16849 979 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 DUOXA1Q1HG43 343 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 FNDC3BQ53EP0 1204 aaKnown RBP17.46■□□□□ 0.39
VIM-205ENST00000485947 ODF2Q5BJF6 829 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 WDR45BQ5MNZ6 344 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 RABGAP1LQ5R372 815 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 SH3PXD2AQ5TCZ1 1133 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 OTUD1Q5VV17 481 aaPredicted RBP17.46■□□□□ 0.39
VIM-205ENST00000485947 KIAA1324Q6UXG2 1013 aaKnown RBP17.46■□□□□ 0.39
VIM-205ENST00000485947 SND1Q7KZF4 910 aaKnown RBP eCLIP17.46■□□□□ 0.395e-29■□□□□ 11.1
VIM-205ENST00000485947 ZNF572Q7Z3I7 529 aaPredicted RBP17.46■□□□□ 0.39
VIM-205ENST00000485947 CHSY1Q86X52 802 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 PSTKQ8IV42 348 aaKnown RBP17.46■□□□□ 0.39
VIM-205ENST00000485947 RCOR2Q8IZ40 523 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 EDEM2Q9BV94 578 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 CYP8B1Q9UNU6 501 aa17.46■□□□□ 0.39
VIM-205ENST00000485947 LNP1A1A4G5 178 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 PGRMC1O00264 195 aaKnown RBP17.45■□□□□ 0.38
VIM-205ENST00000485947 MOCS2O96007 188 aaPredicted RBP17.45■□□□□ 0.38
VIM-205ENST00000485947 KRT1P04264 644 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 ADRB1P08588 477 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 TCF4P15884 667 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 TFE3P19532 575 aaPredicted RBP17.45■□□□□ 0.38
VIM-205ENST00000485947 PRKCHP24723 683 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 IL1R2P27930 398 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 CD70P32970 193 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 GJC1P36383 396 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 VASPP50552 380 aaPredicted RBP17.45■□□□□ 0.38
VIM-205ENST00000485947 COPAP53621 1224 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 RPS24P62847 133 aaKnown RBP17.45■□□□□ 0.38
VIM-205ENST00000485947 SULT2A1Q06520 285 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 CCDC6Q16204 474 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 BRMS1LQ5PSV4 323 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 SCYL2Q6P3W7 929 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 VSIG1Q86XK7 387 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 LGI2Q8N0V4 545 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 FRMD1Q8N878 549 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 RNF34Q969K3 372 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 CAPZA3Q96KX2 299 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 PRMT1Q99873 361 aaKnown RBP17.45■□□□□ 0.38
VIM-205ENST00000485947 ZWILCHQ9H900 591 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 TMEM9BQ9NQ34 198 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 WSB2Q9NYS7 404 aaPredicted RBP17.45■□□□□ 0.38
VIM-205ENST00000485947 STIM2Q9P246 746 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 PCSK1NQ9UHG2 260 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 SLC6A14Q9UN76 642 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 THADAQ6YHU6 1953 aa17.45■□□□□ 0.38
VIM-205ENST00000485947 CNOT1A5YKK6 2376 aaKnown RBP17.44■□□□□ 0.38
VIM-205ENST00000485947 A0A1B0GVM2 712 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 DCDC2BA2VCK2 349 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 TCAF2A6NFQ2 919 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 H0Y626 953 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 RIOK3O14730 519 aaKnown RBP17.44■□□□□ 0.38
VIM-205ENST00000485947 SLU7O95391 586 aaKnown RBP17.44■□□□□ 0.38
VIM-205ENST00000485947 SERPINF2P08697 491 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 RARAP10276 462 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 PYGMP11217 842 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 GNSP15586 552 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 PTPN7P35236 360 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 TPMTP51580 245 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 PLK1P53350 603 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 PITX1P78337 314 aaPredicted RBP17.44■□□□□ 0.38
VIM-205ENST00000485947 PDK2Q15119 407 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 TRIM61Q5EBN2 209 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 ZFYVE27Q5T4F4 411 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 ERMARDQ5T6L9 678 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 RAP1GAP2Q684P5 730 aa17.44■□□□□ 0.38
VIM-205ENST00000485947 CYP4V2Q6ZWL3 525 aaPredicted RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms