RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 NR2C2P49116 596 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 HARS2P49590 506 aaKnown RBP4.31□□□□□ -1.72
VPS41-212ENST00000482217 ACTR2P61160 394 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 RPS16P62249 146 aaKnown RBP4.31□□□□□ -1.72
VPS41-212ENST00000482217 PIGFQ07326 219 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 CETN1Q12798 172 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 TRA2AQ13595 282 aaKnown RBP eCLIP4.31□□□□□ -1.72
VPS41-212ENST00000482217 ITGA7Q13683 1181 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 IRF3Q14653 427 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 RRP1BQ14684 758 aaKnown RBP4.31□□□□□ -1.72
VPS41-212ENST00000482217 STK11Q15831 433 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 CLPPQ16740 277 aaPredicted RBP4.31□□□□□ -1.72
VPS41-212ENST00000482217 FILIP1LQ4L180 1135 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 ZRANB3Q5FWF4 1079 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 KRTAP5-3Q6L8H2 238 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 KLHL17Q6TDP4 642 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 ATF7IPQ6VMQ6 1270 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 SPATA31D4Q6ZUB0 917 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 USP49Q70CQ1 688 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 CCDC80Q76M96 950 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 CTAGE6Q86UF2 777 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 METTL23Q86XA0 190 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 SCN4BQ8IWT1 228 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 CTAGE4Q8IX94 777 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 FANCBQ8NB91 859 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 SUPT20HQ8NEM7 779 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 TMIEQ8NEW7 156 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 OR52K1Q8NGK4 314 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 MR1Q95460 341 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 RAB7BQ96AH8 199 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 NMD3Q96D46 503 aaKnown RBP4.31□□□□□ -1.72
VPS41-212ENST00000482217 C8orf76Q96K31 380 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 PHACTR3Q96KR7 559 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 KLHL32Q96NJ5 620 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 GBP5Q96PP8 586 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 PNKPQ96T60 521 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 P2RX7Q99572 595 aaKnown RBP4.31□□□□□ -1.72
VPS41-212ENST00000482217 EDEM2Q9BV94 578 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 TWSG1Q9GZX9 223 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 TAOK3Q9H2K8 898 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 CLSTN2Q9H4D0 955 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 IL21RQ9HBE5 538 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 SLC35D1Q9NTN3 355 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 ANO10Q9NW15 660 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 TAB2Q9NYJ8 693 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 ATP11BQ9Y2G3 1177 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 PLEKHM1Q9Y4G2 1056 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 POMT1Q9Y6A1 747 aa4.31□□□□□ -1.72
VPS41-212ENST00000482217 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.31□□□□□ -1.72
VPS41-212ENST00000482217 DDX49Q9Y6V7 483 aaKnown RBP4.31□□□□□ -1.72
VPS41-212ENST00000482217 TRAV34A0A0B4J273 112 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 GOLGA6L10A0A0M3HER8 536 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 CCDC151A5D8V7 595 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 GRXCR1A8MXD5 290 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 HNRNPCL2B2RXH8 293 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 LEFTY2O00292 366 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 DNM1LO00429 736 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 BTN3A1O00481 513 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 FCHO1O14526 889 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 HNRNPCL1O60812 293 aaKnown RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 ZC3H11AO75152 810 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS41-212ENST00000482217 ACTL6BO94805 426 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 PRSS23O95084 383 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 METTL18O95568 372 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 ABHD16AO95870 558 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 PRKCBP05771 671 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TPBGLP0DKB5 382 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 GHRP10912 638 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 PSMA4P25789 261 aaKnown RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 GABRB3P28472 473 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 APOBEC3AP31941 199 aaPredicted RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 RDXP35241 583 aaKnown RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 RFC4P35249 363 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 NT5C2P49902 561 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 PEX5P50542 639 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 HSD17B4P51659 736 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 ZNF135P52742 658 aaPredicted RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 HADHBP55084 474 aaKnown RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 POU6F2P78424 691 aaPredicted RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 GABPB1Q06547 395 aaPredicted RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 SLFN5Q08AF3 891 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 BNIP1Q12981 228 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 MPP3Q13368 585 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TDGQ13569 410 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TNFAIP1Q13829 316 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 FRG1Q14331 258 aaKnown RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 R3HDM1Q15032 1099 aaKnown RBP4.3□□□□□ -1.72
VPS41-212ENST00000482217 PDK1Q15118 436 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TRADDQ15628 312 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 INAQ16352 499 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 BAK1Q16611 211 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 CCDC40Q4G0X9 1142 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 SLC39A12Q504Y0 691 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 SLC44A4Q53GD3 710 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 ZNF628Q5EBL2 1059 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 TCP11X2Q5H9J9 407 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 NOMO2Q5JPE7 1267 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 FAM69AQ5T7M9 428 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 FAXCQ5TGI0 409 aa4.3□□□□□ -1.72
VPS41-212ENST00000482217 CES4AQ5XG92 561 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms