RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 CEP44Q9C0F1 390 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 LZTFL1Q9NQ48 299 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 TTC34A8MYJ7 566 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 ZSCAN12O43309 604 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 MT-CO1P00395 513 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 CDKN2BP42772 138 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 PEX5P50542 639 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 PAPOLAP51003 745 aaKnown RBP20.15■□□□□ 0.82
LIME1-205ENST00000480139 TCF15Q12870 199 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 SLC9A4Q6AI14 798 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 TSSK4Q6SA08 328 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 LRRC49Q8IUZ0 686 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 ATP11CQ8NB49 1132 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 ALS2CR12Q96Q35 445 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 PDFQ9HBH1 243 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 PRSS16Q9NQE7 514 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 MFHAS1Q9Y4C4 1052 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 FANCMQ8IYD8 2048 aa20.15■□□□□ 0.82
LIME1-205ENST00000480139 ZBTB24O43167 697 aaPredicted RBP20.14■□□□□ 0.81
LIME1-205ENST00000480139 PRAMEF11O60813 436 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 CD160O95971 181 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 ZFXP17010 805 aaPredicted RBP20.14■□□□□ 0.81
LIME1-205ENST00000480139 GABRG2P18507 467 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 COPAP53621 1224 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 PTPN5P54829 565 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 RWDD2BP57060 319 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 COPS2P61201 443 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 DLG2Q15700 870 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 PPP2R5EQ16537 467 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 INO80DQ53TQ3 878 aaPredicted RBP20.14■□□□□ 0.81
LIME1-205ENST00000480139 C9orf64Q5T6V5 341 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 MFSD7Q6UXD7 560 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 LINGO4Q6UY18 593 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 SPOCD1Q6ZMY3 1216 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 WDR5BQ86VZ2 330 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 LONP2Q86WA8 852 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 ZNF354CQ86Y25 554 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 UBL4BQ8N7F7 174 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 ZNF366Q8N895 744 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 TRIM58Q8NG06 486 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 OR2T3Q8NH03 318 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 PTPRN2Q92932 1015 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 ISG20Q96AZ6 181 aaKnown RBP20.14■□□□□ 0.81
LIME1-205ENST00000480139 RNF25Q96BH1 459 aaPredicted RBP20.14■□□□□ 0.81
LIME1-205ENST00000480139 HES6Q96HZ4 224 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 MAK16Q9BXY0 300 aaKnown RBP20.14■□□□□ 0.81
LIME1-205ENST00000480139 ZSCAN32Q9NX65 697 aa20.14■□□□□ 0.81
LIME1-205ENST00000480139 DFFAO00273 331 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 MFSD11O43934 449 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 SIN3BO75182 1162 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 FTCDO95954 541 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 IL10RBQ08334 325 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 ELAVL3Q14576 367 aaKnown RBP20.13■□□□□ 0.81
LIME1-205ENST00000480139 TFDP3Q5H9I0 405 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 ANO7Q6IWH7 933 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 C22orf39Q6P5X5 142 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 PLD5Q8N7P1 536 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 ZBTB44Q8NCP5 570 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 MDGA1Q8NFP4 955 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.13■□□□□ 0.81
LIME1-205ENST00000480139 EFR3BQ9Y2G0 817 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 ARIH1Q9Y4X5 557 aaPredicted RBP20.13■□□□□ 0.81
LIME1-205ENST00000480139 PCDHGA2Q9Y5H1 932 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 EML5Q05BV3 1969 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 PLXND1Q9Y4D7 1925 aa20.13■□□□□ 0.81
LIME1-205ENST00000480139 hCG_1818297A0A087WSY0 165 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 K7ERQ8 282 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 APOL1O14791 398 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 AXIN1O15169 862 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 ALOX15BO15296 676 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 SMAD6O43541 496 aaKnown RBP20.12■□□□□ 0.81
LIME1-205ENST00000480139 NDUFV2P19404 249 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 PTPN7P35236 360 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 DMWDQ09019 674 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 GALNT2Q10471 571 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 TFDP2Q14188 446 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 ACCSLQ4AC99 568 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 REXO1L1PQ8IX06 675 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 PLPP6Q8IY26 295 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 PCDH20Q8N6Y1 951 aaKnown RBP20.12■□□□□ 0.81
LIME1-205ENST00000480139 HMGB4Q8WW32 186 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 ALG3Q92685 438 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 MRGPRX1Q96LB2 322 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 CCDC114Q96M63 670 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 ZNF599Q96NL3 588 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 MKRN2Q9H000 416 aaKnown RBP20.12■□□□□ 0.81
LIME1-205ENST00000480139 RSPH9Q9H1X1 276 aaPredicted RBP20.12■□□□□ 0.81
LIME1-205ENST00000480139 BCCIPQ9P287 314 aaKnown RBP eCLIP20.12■□□□□ 0.81
LIME1-205ENST00000480139 IPO11Q9UI26 975 aaKnown RBP20.12■□□□□ 0.81
LIME1-205ENST00000480139 MUC6Q6W4X9 2439 aa20.12■□□□□ 0.81
LIME1-205ENST00000480139 CACNA1HO95180 2353 aa20.11■□□□□ 0.81
LIME1-205ENST00000480139 J3KR12 359 aa20.11■□□□□ 0.81
LIME1-205ENST00000480139 DDX3YO15523 660 aaKnown RBP20.11■□□□□ 0.81
LIME1-205ENST00000480139 ZNF821O75541 412 aaPredicted RBP20.11■□□□□ 0.81
LIME1-205ENST00000480139 CNR2P34972 360 aa20.11■□□□□ 0.81
LIME1-205ENST00000480139 ZBTB16Q05516 673 aa20.11■□□□□ 0.81
LIME1-205ENST00000480139 RFTN1Q14699 578 aaPredicted RBP20.11■□□□□ 0.81
LIME1-205ENST00000480139 RFX6Q8HWS3 928 aa20.11■□□□□ 0.81
LIME1-205ENST00000480139 CCDC50Q8IVM0 306 aa20.11■□□□□ 0.81
LIME1-205ENST00000480139 TP53INP2Q8IXH6 220 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms