RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 EFL1Q7Z2Z2 1120 aaKnown RBP16.51■□□□□ 0.23
DDX56-210ENST00000479440 PARGQ86W56 976 aa16.51■□□□□ 0.23
DDX56-210ENST00000479440 WDR36Q8NI36 951 aaKnown RBP16.51■□□□□ 0.23
DDX56-210ENST00000479440 WDR48Q8TAF3 677 aa16.51■□□□□ 0.23
DDX56-210ENST00000479440 PPP1R16AQ96I34 528 aa16.51■□□□□ 0.23
DDX56-210ENST00000479440 RPRD1AQ96P16 312 aaPredicted RBP16.51■□□□□ 0.23
DDX56-210ENST00000479440 NT5C1BQ96P26 610 aa16.51■□□□□ 0.23
DDX56-210ENST00000479440 CCNL2Q96S94 520 aaPredicted RBP16.51■□□□□ 0.23
DDX56-210ENST00000479440 TSG101Q99816 390 aa16.51■□□□□ 0.23
DDX56-210ENST00000479440 SRRTQ9BXP5 876 aaKnown RBP16.51■□□□□ 0.23
DDX56-210ENST00000479440 TRIM4Q9C037 500 aa16.51■□□□□ 0.23
DDX56-210ENST00000479440 IL17BQ9UHF5 180 aa16.51■□□□□ 0.23
DDX56-210ENST00000479440 RCOR1Q9UKL0 485 aa16.51■□□□□ 0.23
DDX56-210ENST00000479440 CSNK1G3Q9Y6M4 447 aa16.51■□□□□ 0.23
DDX56-210ENST00000479440 CPED1A4D0V7 1026 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 PCDH8O95206 1070 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 TRUB2O95900 331 aaKnown RBP16.5■□□□□ 0.23
DDX56-210ENST00000479440 IGLV3-25P01717 112 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 CSF2P04141 144 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 PRNPP04156 253 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 SLC2A3P11169 496 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 NME1P15531 152 aaKnown RBP16.5■□□□□ 0.23
DDX56-210ENST00000479440 DNM1Q05193 864 aaKnown RBP16.5■□□□□ 0.23
DDX56-210ENST00000479440 MTA1Q13330 715 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 NR0B2Q15466 257 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 ZNF542PQ5EBM4 170 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 SYPL2Q5VXT5 272 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 XKR5Q6UX68 686 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 GLMNQ92990 594 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 PRR11Q96HE9 360 aaPredicted RBP16.5■□□□□ 0.23
DDX56-210ENST00000479440 NOX5Q96PH1 765 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 PRMT1Q99873 361 aaKnown RBP16.5■□□□□ 0.23
DDX56-210ENST00000479440 FAM204AQ9H8W3 233 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 GPR27Q9NS67 375 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 SALL4Q9UJQ4 1053 aa16.5■□□□□ 0.23
DDX56-210ENST00000479440 CCDC187A0A096LP49 1063 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 A0A1W2PNU3 283 aaPredicted RBP16.49■□□□□ 0.23
DDX56-210ENST00000479440 EME2A4GXA9 379 aaPredicted RBP16.49■□□□□ 0.23
DDX56-210ENST00000479440 AQP9O43315 295 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 CTSLP07711 333 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 ITGA2BP08514 1039 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 KRT10P13645 584 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 CHRNA3P32297 505 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 RABIFP47224 123 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 RPL34P49207 117 aaKnown RBP16.49■□□□□ 0.23
DDX56-210ENST00000479440 RPIAP49247 311 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 KRT83P78385 493 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 CENPCQ03188 943 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 ARL13BQ3SXY8 428 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 OR6B2Q6IFH4 312 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 KIAA1161Q6NSJ0 714 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 ZSCAN30Q86W11 494 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 PPM1KQ8N3J5 372 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 TMIEQ8NEW7 156 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 ARRDC3Q96B67 414 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 ALG14Q96F25 216 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 CCDC34Q96HJ3 373 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 ZSWIM1Q9BR11 485 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 ARHGAP9Q9BRR9 750 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 FEM1AQ9BSK4 669 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 WDR70Q9NW82 654 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 ATXN7L1Q9ULK2 861 aaPredicted RBP16.49■□□□□ 0.23
DDX56-210ENST00000479440 ZFR2Q9UPR6 939 aaKnown RBP16.49■□□□□ 0.23
DDX56-210ENST00000479440 HS3ST2Q9Y278 367 aa16.49■□□□□ 0.23
DDX56-210ENST00000479440 COL27A1Q8IZC6 1860 aaPredicted RBP16.48■□□□□ 0.23
DDX56-210ENST00000479440 TNFSF15O95150 251 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 CENPBP07199 599 aaPredicted RBP16.48■□□□□ 0.23
DDX56-210ENST00000479440 CCR1P32246 355 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 TMEM259Q4ZIN3 620 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 SEL1L3Q68CR1 1132 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 FBXL22Q6P050 247 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 ATG14Q6ZNE5 492 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 ERN2Q76MJ5 926 aaKnown RBP16.48■□□□□ 0.23
DDX56-210ENST00000479440 SMYD4Q8IYR2 804 aaPredicted RBP16.48■□□□□ 0.23
DDX56-210ENST00000479440 ATP11CQ8NB49 1132 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 NAT6Q93015 286 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 SLC35C1Q96A29 364 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 MED15Q96RN5 788 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 C2orf49Q9BVC5 232 aaPredicted RBP16.48■□□□□ 0.23
DDX56-210ENST00000479440 HDAC8Q9BY41 377 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 MUC3BQ9H195 1237 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 ARMCX3Q9UH62 379 aaPredicted RBP16.48■□□□□ 0.23
DDX56-210ENST00000479440 IPO11Q9UI26 975 aaKnown RBP16.48■□□□□ 0.23
DDX56-210ENST00000479440 HS3ST3A1Q9Y663 406 aa16.48■□□□□ 0.23
DDX56-210ENST00000479440 SPTY2D1-AS1A0A0U1RR47 76 aa16.47■□□□□ 0.23
DDX56-210ENST00000479440 TERTO14746 1132 aaKnown RBP16.47■□□□□ 0.23
DDX56-210ENST00000479440 TPP1O14773 563 aa16.47■□□□□ 0.23
DDX56-210ENST00000479440 CLDN11O75508 207 aa16.47■□□□□ 0.23
DDX56-210ENST00000479440 SRCP12931 536 aa16.47■□□□□ 0.23
DDX56-210ENST00000479440 GPD2P43304 727 aa16.47■□□□□ 0.23
DDX56-210ENST00000479440 CLCN6P51797 869 aa16.47■□□□□ 0.23
DDX56-210ENST00000479440 NEK3P51956 506 aa16.47■□□□□ 0.23
DDX56-210ENST00000479440 NDUFA8P51970 172 aa16.47■□□□□ 0.23
DDX56-210ENST00000479440 YWHAZP63104 245 aaKnown RBP16.47■□□□□ 0.23
DDX56-210ENST00000479440 RPS21P63220 83 aaKnown RBP16.47■□□□□ 0.23
DDX56-210ENST00000479440 FKBP3Q00688 224 aaKnown RBP16.47■□□□□ 0.23
DDX56-210ENST00000479440 MAPK8IP2Q13387 824 aaPredicted RBP16.47■□□□□ 0.23
DDX56-210ENST00000479440 FZD2Q14332 565 aa16.47■□□□□ 0.23
DDX56-210ENST00000479440 MEA1Q16626 185 aa16.47■□□□□ 0.23
DDX56-210ENST00000479440 DEFB133Q30KQ1 61 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms