RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 NCKIPSDQ9NZQ3 722 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 HS3ST3A1Q9Y663 406 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.62■□□□□ 0.41
VIM-204ENST00000478746 CDRT15L2A8MXV6 281 aa17.62■□□□□ 0.41
VIM-204ENST00000478746 KPNA3O00505 521 aaPredicted RBP17.62■□□□□ 0.41
VIM-204ENST00000478746 TRUB2O95900 331 aaKnown RBP17.62■□□□□ 0.41
VIM-204ENST00000478746 ACADSBP45954 432 aa17.62■□□□□ 0.41
VIM-204ENST00000478746 ZNF177Q13360 481 aaPredicted RBP17.62■□□□□ 0.41
VIM-204ENST00000478746 GCNT7Q6ZNI0 430 aa17.62■□□□□ 0.41
VIM-204ENST00000478746 RBM44Q6ZP01 1051 aaKnown RBP17.62■□□□□ 0.41
VIM-204ENST00000478746 EFL1Q7Z2Z2 1120 aaKnown RBP17.62■□□□□ 0.41
VIM-204ENST00000478746 SH2D3CQ8N5H7 860 aa17.62■□□□□ 0.41
VIM-204ENST00000478746 EXD3Q8N9H8 876 aa17.62■□□□□ 0.41
VIM-204ENST00000478746 PRMT1Q99873 361 aaKnown RBP17.62■□□□□ 0.41
VIM-204ENST00000478746 DYRK4Q9NR20 520 aa17.62■□□□□ 0.41
VIM-204ENST00000478746 ZFR2Q9UPR6 939 aaKnown RBP17.62■□□□□ 0.41
VIM-204ENST00000478746 A6NNZ2 444 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 TNFSF15O95150 251 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 CTSLP07711 333 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 CHRNA3P32297 505 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 RPL34P49207 117 aaKnown RBP17.61■□□□□ 0.41
VIM-204ENST00000478746 CLN3Q13286 438 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 OR6B2Q6IFH4 312 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 FBXL22Q6P050 247 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 GUSBP11Q6P575 273 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 PTAR1Q7Z6K3 402 aaPredicted RBP17.61■□□□□ 0.41
VIM-204ENST00000478746 TMIEQ8NEW7 156 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 WDR36Q8NI36 951 aaKnown RBP17.61■□□□□ 0.41
VIM-204ENST00000478746 ARRDC3Q96B67 414 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 BMFQ96LC9 184 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 NT5C1BQ96P26 610 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 CCNL2Q96S94 520 aaPredicted RBP17.61■□□□□ 0.41
VIM-204ENST00000478746 TRIM4Q9C037 500 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 POPDC2Q9HBU9 364 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 WDR70Q9NW82 654 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 VPS28Q9UK41 221 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 CSNK1G3Q9Y6M4 447 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 COL12A1Q99715 3063 aa17.61■□□□□ 0.41
VIM-204ENST00000478746 KIF26BQ2KJY2 2108 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 EME2A4GXA9 379 aaPredicted RBP17.6■□□□□ 0.41
VIM-204ENST00000478746 RIOK3O14730 519 aaKnown RBP17.6■□□□□ 0.41
VIM-204ENST00000478746 SLC16A3O15427 465 aaKnown RBP17.6■□□□□ 0.41
VIM-204ENST00000478746 IGLV3-25P01717 112 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 CSF2P04141 144 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 SLC2A3P11169 496 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 GPD2P43304 727 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 NDUFA8P51970 172 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 YWHAZP63104 245 aaKnown RBP17.6■□□□□ 0.41
VIM-204ENST00000478746 FZD2Q14332 565 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 SEL1L3Q68CR1 1132 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 SMYD4Q8IYR2 804 aaPredicted RBP17.6■□□□□ 0.41
VIM-204ENST00000478746 PPM1KQ8N3J5 372 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 ZNF548Q8NEK5 533 aaPredicted RBP17.6■□□□□ 0.41
VIM-204ENST00000478746 OR52K2Q8NGK3 314 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 CCDC114Q96M63 670 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 RPRD1AQ96P16 312 aaPredicted RBP17.6■□□□□ 0.41
VIM-204ENST00000478746 IPO11Q9UI26 975 aaKnown RBP17.6■□□□□ 0.41
VIM-204ENST00000478746 SALL4Q9UJQ4 1053 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 OR51B4Q9Y5P0 310 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 TRPM6Q9BX84 2022 aa17.6■□□□□ 0.41
VIM-204ENST00000478746 RP1P56715 2156 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 SPTY2D1-AS1A0A0U1RR47 76 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 H3BM21 787 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 TCEA3O75764 348 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 MT-CO1P00395 513 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 PRNPP04156 253 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 MLLT3P42568 568 aaPredicted RBP17.59■□□□□ 0.41
VIM-204ENST00000478746 PITX1P78337 314 aaPredicted RBP17.59■□□□□ 0.41
VIM-204ENST00000478746 CENPCQ03188 943 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 SRSF1Q07955 248 aaKnown RBP eCLIP17.59■□□□□ 0.41
VIM-204ENST00000478746 EIF4EBP2Q13542 120 aaPredicted RBP17.59■□□□□ 0.41
VIM-204ENST00000478746 NR0B2Q15466 257 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 CRTC1Q6UUV9 634 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 XKR5Q6UX68 686 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 ERN2Q76MJ5 926 aaKnown RBP17.59■□□□□ 0.41
VIM-204ENST00000478746 CLEC14AQ86T13 490 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 ATP11CQ8NB49 1132 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 OR2A12Q8NGT7 310 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 KAT5Q92993 513 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 SLC35C1Q96A29 364 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 MED15Q96RN5 788 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 TSG101Q99816 390 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 SLC17A9Q9BYT1 436 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 ARMCX3Q9UH62 379 aaPredicted RBP17.59■□□□□ 0.41
VIM-204ENST00000478746 BOD1L1Q8NFC6 3051 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 PTPN13Q12923 2485 aa17.59■□□□□ 0.41
VIM-204ENST00000478746 SYNJ2BP-COX16A0A087WUM0 186 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 PMS2P1A4D2B8 440 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 POM121BA6NF01 834 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 EFSO43281 561 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 AQP9O43315 295 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 PAK4O96013 591 aaPredicted RBP17.58■□□□□ 0.4
VIM-204ENST00000478746 SRCP12931 536 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 NME1P15531 152 aaKnown RBP17.58■□□□□ 0.4
VIM-204ENST00000478746 CCR1P32246 355 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 FMO5P49326 533 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 KRT83P78385 493 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 FKBP3Q00688 224 aaKnown RBP17.58■□□□□ 0.4
VIM-204ENST00000478746 MAPK8IP2Q13387 824 aaPredicted RBP17.58■□□□□ 0.4
VIM-204ENST00000478746 AUHQ13825 339 aaKnown RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms