RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MLKLQ8NB16 471 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 RBBP8NLQ8NC74 664 aaPredicted RBP7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 SLC35F5Q8WV83 523 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 HMGB4Q8WW32 186 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 IRGQQ8WZA9 623 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 TFAP2BQ92481 460 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 NDRG1Q92597 394 aaKnown RBP7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 KAT5Q92993 513 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 FAM81BQ96LP2 452 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 RTKNQ9BST9 563 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 INTS2Q9H0H0 1204 aaKnown RBP7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 DUSP15Q9H1R2 295 aaPredicted RBP7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 ARRDC1-AS1Q9H2J1 176 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 ABCC13Q9NSE7 274 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 AGO1Q9UL18 857 aaKnown RBP7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 CKAP5Q14008 2032 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 TCRBV21S2A2A0A5A6 115 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 YJEFN3A6XGL0 299 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 E7ENQ6 273 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 DCLK1O15075 740 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 TRIM24O15164 1050 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 MED7O43513 233 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 SEMA7AO75326 666 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 FBXO21O94952 628 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 PENKP01210 267 aaPredicted RBP7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 CISD3P0C7P0 127 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 KRT5P13647 590 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 HNRNPLP14866 589 aaKnown RBP eCLIP7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 NTSR1P30989 418 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 ANP32AP39687 249 aaKnown RBP7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 P2RY2P41231 377 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 RGS7P49802 495 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 ZNF132P52740 706 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 ATXN1P54253 815 aaKnown RBP7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 MFAP3P55082 362 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 DAOAP59103 153 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 ZNF445P59923 1031 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 CREB5Q02930 508 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 E2F5Q15329 346 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 CCDC6Q16204 474 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 TPD52L1Q16890 204 aaPredicted RBP7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 EGFLAMQ63HQ2 1017 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 PMS2CLQ68D20 193 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 PMF1Q6P1K2 205 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 TRIM65Q6PJ69 517 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 TOGARAM2Q6ZUX3 1019 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 ENOSF1Q7L5Y1 443 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 FMNL3Q8IVF7 1028 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 FAM217AQ8IXS0 508 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 CHPFQ8IZ52 775 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 CPXM2Q8N436 756 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 OLIG1Q8TAK6 271 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 GOLGA1Q92805 767 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 PLPPR2Q96GM1 343 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 HSFY1Q96LI6 401 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 KREMEN1Q96MU8 473 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 ZSWIM1Q9BR11 485 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 CLSTN2Q9H4D0 955 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 UBE2TQ9NPD8 197 aaPredicted RBP7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 ZDHHC4Q9NPG8 344 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 VPS45Q9NRW7 570 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 PLK2Q9NYY3 685 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 SFMBT1Q9UHJ3 866 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 FBXO10Q9UK96 956 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 CNTN6Q9UQ52 1028 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 INVSQ9Y283 1065 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 SLC27A6Q9Y2P4 619 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 HBS1LQ9Y450 684 aaKnown RBP7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 CACNA1AO00555 2505 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 DNAH14Q0VDD8 3507 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 GON4LQ3T8J9 2241 aa7.08□□□□□ -1.28
CCDC88A-213ENST00000476903 BCLAF3A2AJT9 711 aaKnown RBP7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 PRAMEF27A3QJZ7 478 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 GTPBP10A4D1E9 387 aaKnown RBP7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 PRRT4C9JH25 899 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 GFRA2O00451 464 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 SLC30A4O14863 429 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 NPC1O15118 1278 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 CAVIN2O95810 425 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 LATS1O95835 1130 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 CALCAP01258 141 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 LTFP02788 710 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 ZGLP1P0C6A0 271 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 GABRG2P18507 467 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 BCKDHBP21953 392 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 ACADSBP45954 432 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 MTIF2P46199 727 aaKnown RBP7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 LIMK1P53667 647 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 SF3A2Q15428 464 aaKnown RBP7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 MEA1Q16626 185 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 MPPE1Q53F39 396 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 PRAMEF13Q5VWM6 474 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 MSANTD2Q6P1R3 559 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 GBP6Q6ZN66 633 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 LPCAT2Q7L5N7 544 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 ANKS1BQ7Z6G8 1248 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 FAM114A1Q8IWE2 563 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 PIWIL2Q8TC59 973 aaKnown RBP7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 DDI1Q8WTU0 396 aa7.07□□□□□ -1.28
CCDC88A-213ENST00000476903 UCMAQ8WVF2 138 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms