RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TRIP4Q15650 581 aaPredicted RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 BMT2Q1RMZ1 405 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 CRTC2Q53ET0 693 aaPredicted RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 FAM133BQ5BKY9 247 aaKnown RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 PHF19Q5T6S3 580 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 CPZQ66K79 652 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 JMJD6Q6NYC1 403 aaPredicted RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 KYAT3Q6YP21 454 aaKnown RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 CXXC5Q7LFL8 322 aaKnown RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 ZNF438Q7Z4V0 828 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 SPRED1Q7Z699 444 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 CDH24Q86UP0 819 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 HORMAD1Q86X24 394 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 APCDD1Q8J025 514 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 ARL10Q8N8L6 244 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 C12orf29Q8N999 325 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 SPATA3Q8NHX4 192 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 SLC2A14Q8TDB8 520 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 POMGNT1Q8WZA1 660 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 TMEM159Q96B96 161 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 SNRNP40Q96DI7 357 aaKnown RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 RNF31Q96EP0 1072 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 ZNF274Q96GC6 653 aaPredicted RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 NUDT22Q9BRQ3 303 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 CBWD1Q9BRT8 395 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 STRA6Q9BX79 667 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 XYLT2Q9H1B5 865 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 SNX25Q9H3E2 840 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 FBXO44Q9H4M3 255 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 MLXIPLQ9NP71 852 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 DLL4Q9NR61 685 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 ASF1BQ9NVP2 202 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.95□□□□□ -1.62
USP4-209ENST00000475873 RBAKQ9NYW8 714 aaPredicted RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 LARSQ9P2J5 1176 aaKnown RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 RCOR3Q9P2K3 495 aaPredicted RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 GULP1Q9UBP9 304 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 GGT7Q9UJ14 662 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 NAGPAQ9UK23 515 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 KCTD3Q9Y597 815 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 OAS3Q9Y6K5 1087 aaKnown RBP4.95□□□□□ -1.62
USP4-209ENST00000475873 TLN2Q9Y4G6 2542 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 CACNA1CQ13936 2221 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 ANKUB1A6NFN9 424 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 H0YCG3 227 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 H3BM21 787 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 RIOK3O14730 519 aaKnown RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 CAPN5O15484 640 aaPredicted RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 B4GAT1O43505 415 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 TBL1XO60907 577 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 TMEM191BP0C7N4 346 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 CD99P14209 185 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 TCN2P20062 427 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 HNRNPH3P31942 346 aaKnown RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 PTGER4P35408 488 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 DDIT3P35638 169 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 RECQLP46063 649 aaPredicted RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 KIF11P52732 1056 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 PFN3P60673 137 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 RPS24P62847 133 aaKnown RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 PDE1CQ14123 709 aaPredicted RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 PITRM1Q5JRX3 1037 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 HYIQ5T013 277 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 PIK3R6Q5UE93 754 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 ANKS6Q68DC2 871 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 SLC6A19Q695T7 634 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 NADSYN1Q6IA69 706 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 SLFN12LQ6IEE8 588 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 CLEC20AQ6ZU45 233 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 BHLHA9Q7RTU4 235 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 CCDC186Q7Z3E2 898 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 ACOT1Q86TX2 421 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 PHACTR4Q8IZ21 702 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 MYCT1Q8N699 235 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 RBMXL3Q8N7X1 1067 aaKnown RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 BMPERQ8N8U9 685 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 KDM1BQ8NB78 822 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 GLIS1Q8NBF1 620 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 GPR156Q8NFN8 814 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 FIBINQ8TAL6 211 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 CACTINQ8WUQ7 758 aaKnown RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 FUBP1Q96AE4 644 aaKnown RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 TMA16Q96EY4 203 aaKnown RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 TAAR9Q96RI9 348 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 CGRRF1Q99675 332 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 MED10Q9BTT4 135 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 DCLK3Q9C098 648 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 LATS2Q9NRM7 1088 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 FAM49BQ9NUQ9 324 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 OCIAD1Q9NX40 245 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 CLIC5Q9NZA1 410 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 MARCH2Q9P0N8 246 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 ORC3Q9UBD5 711 aaPredicted RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 APOBEC3BQ9UH17 382 aaKnown RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 PHTF1Q9UMS5 762 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 NTNG1Q9Y2I2 539 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 RPH3AQ9Y2J0 694 aaPredicted RBP4.94□□□□□ -1.62
USP4-209ENST00000475873 HS3ST3A1Q9Y663 406 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 USP3Q9Y6I4 520 aa4.94□□□□□ -1.62
USP4-209ENST00000475873 IGHV5-10-1A0A0J9YXX1 117 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms