RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SETD7Q8WTS6 366 aaKnown RBP19.02■□□□□ 0.64
COL7A1-209ENST00000474432 C2orf49Q9BVC5 232 aaPredicted RBP19.02■□□□□ 0.64
COL7A1-209ENST00000474432 PPARGC1AQ9UBK2 798 aaKnown RBP19.02■□□□□ 0.64
COL7A1-209ENST00000474432 MSRB2Q9Y3D2 182 aa19.02■□□□□ 0.64
COL7A1-209ENST00000474432 ILVBLA1L0T0 632 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 FAM72CH0Y354 149 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 SLC7A4O43246 635 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 PCDHGA12O60330 932 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 DKK1O94907 266 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 TRIM16O95361 564 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 CD160O95971 181 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 TPM2P07951 284 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 OR1E1P30953 314 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 RFC1P35251 1148 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-209ENST00000474432 PTPN9P43378 593 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 HDAC4P56524 1084 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 KRT83P78385 493 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 NRG1Q02297 640 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-209ENST00000474432 UBXN1Q04323 297 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 TYRO3Q06418 890 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 POM121L1PQ3SYA9 428 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 PRAMEF14Q5SWL7 426 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 FAM72AQ5TYM5 149 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 FAM72DQ6L9T8 149 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 FAM72BQ86X60 149 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 KDF1Q8NAX2 398 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-209ENST00000474432 CHST14Q8NCH0 376 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 NEK11Q8NG66 645 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 ADAMTS14Q8WXS8 1223 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 ZYG11BQ9C0D3 744 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 NDFIP2Q9NV92 336 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 PCDHB9Q9Y5E1 797 aa19.01■□□□□ 0.63
COL7A1-209ENST00000474432 TBC1D3DA0A087WVF3 549 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 TBC1D3IA0A087WXS9 549 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 TBC1D3EA0A087X179 549 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 TBC1D3KA0A087X1G2 549 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 A0A1B0GTQ1 180 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 TBC1D3FA6NER0 549 aaPredicted RBP19■□□□□ 0.63
COL7A1-209ENST00000474432 TBC1D3LB9A6J9 549 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 FLRT2O43155 660 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 MBD3O95983 291 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 TBC1D3HP0C7X1 549 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 ARF5P84085 180 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 CDO1Q16878 200 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 C6orf118Q5T5N4 469 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 PIP5KL1Q5T9C9 394 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 FAM46CQ5VWP2 391 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 TBC1D3GQ6DHY5 549 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 TBC1D3CQ6IPX1 549 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 MON1BQ7L1V2 547 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 STRADAQ7RTN6 431 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 DSG4Q86SJ6 1040 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 NLRP14Q86W24 1093 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 TBC1D3Q8IZP1 549 aaPredicted RBP19■□□□□ 0.63
COL7A1-209ENST00000474432 AOPEPQ8N6M6 819 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 ATP11CQ8NB49 1132 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 VOPP1Q96AW1 172 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 ARRDC3Q96B67 414 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 SYT11Q9BT88 431 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 ACE2Q9BYF1 805 aaPredicted RBP19■□□□□ 0.63
COL7A1-209ENST00000474432 OSBPL2Q9H1P3 480 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 KDM4CQ9H3R0 1056 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 ACTL7AQ9Y615 435 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 CHD6Q8TD26 2715 aa19■□□□□ 0.63
COL7A1-209ENST00000474432 ARID1BQ8NFD5 2236 aaPredicted RBP18.99■□□□□ 0.63
COL7A1-209ENST00000474432 GOLGA6L22H0YM25 854 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 ZZEF1O43149 2961 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 TEX33O43247 280 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 BNIP3LO60238 219 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 CAPNS1P04632 268 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 ATXN1LP0C7T5 689 aaKnown RBP18.99■□□□□ 0.63
COL7A1-209ENST00000474432 CD38P28907 300 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 SDC4P31431 198 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 CHRNA3P32297 505 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 CLCN6P51797 869 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 IL9RQ01113 521 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 GNA12Q03113 381 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 C22orf39Q6P5X5 142 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 WDR59Q6PJI9 974 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 ZNF783Q6ZMS7 281 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 CCDC185Q8N715 623 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 RHBDD1Q8TEB9 315 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 PCMTD1Q96MG8 357 aaPredicted RBP18.99■□□□□ 0.63
COL7A1-209ENST00000474432 AGPAT1Q99943 283 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 ADAM22Q9P0K1 906 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 OR12D3Q9UGF7 316 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 WDFY3Q8IZQ1 3526 aa18.99■□□□□ 0.63
COL7A1-209ENST00000474432 C1QTNF3-AMACRE9PGA6 284 aa18.98■□□□□ 0.63
COL7A1-209ENST00000474432 KRT3P12035 628 aa18.98■□□□□ 0.63
COL7A1-209ENST00000474432 CDK11BP21127 795 aaKnown RBP18.98■□□□□ 0.63
COL7A1-209ENST00000474432 ACVRL1P37023 503 aa18.98■□□□□ 0.63
COL7A1-209ENST00000474432 CCT8P50990 548 aa18.98■□□□□ 0.63
COL7A1-209ENST00000474432 PPP1R15BQ5SWA1 713 aa18.98■□□□□ 0.63
COL7A1-209ENST00000474432 LRSAM1Q6UWE0 723 aa18.98■□□□□ 0.63
COL7A1-209ENST00000474432 IRF2BP2Q7Z5L9 587 aa18.98■□□□□ 0.63
COL7A1-209ENST00000474432 ADAT2Q7Z6V5 191 aaKnown RBP18.98■□□□□ 0.63
COL7A1-209ENST00000474432 TRIM69Q86WT6 500 aa18.98■□□□□ 0.63
COL7A1-209ENST00000474432 SPATS2Q86XZ4 545 aaKnown RBP18.98■□□□□ 0.63
COL7A1-209ENST00000474432 DRC7Q8IY82 874 aa18.98■□□□□ 0.63
COL7A1-209ENST00000474432 C3orf20Q8ND61 904 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms