RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 CFLARO15519 480 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 XRCC1P18887 633 aaPredicted RBP21.49■■□□□ 1.03
COL18A1-207ENST00000473212 PPIL2Q13356 520 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 WSCD1Q658N2 575 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 DNAJB3Q8WWF6 145 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 ZFP42Q96MM3 310 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 SERPINI1Q99574 410 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 OXSMQ9NWU1 459 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 DERAQ9Y315 318 aa21.49■■□□□ 1.03
COL18A1-207ENST00000473212 MATN2O00339 956 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 PHGDHO43175 533 aaKnown RBP21.48■■□□□ 1.03
COL18A1-207ENST00000473212 DNAJA2O60884 412 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 DAB1O75553 588 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 AVPR1AP37288 418 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 PKNOX1P55347 436 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 LILRA4P59901 499 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 FLOT2Q14254 428 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 CNGA3Q16281 694 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 PRAMEF19Q5SWL8 479 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 C16orf89Q6UX73 402 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 SPATA6LQ8N4H0 392 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 RNF148Q8N7C7 305 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 NT5C3BQ969T7 300 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 MARK4Q96L34 752 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 DUSP16Q9BY84 665 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 UBE2OQ9C0C9 1292 aaKnown RBP21.48■■□□□ 1.03
COL18A1-207ENST00000473212 IARS2Q9NSE4 1012 aaKnown RBP21.48■■□□□ 1.03
COL18A1-207ENST00000473212 PRPF19Q9UMS4 504 aaKnown RBP21.48■■□□□ 1.03
COL18A1-207ENST00000473212 SMIM31A0A1B0GVY4 71 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 AP1G1O43747 822 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 AP2A1O95782 977 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 JUNP05412 331 aaKnown RBP21.48■■□□□ 1.03
COL18A1-207ENST00000473212 NMBRP28336 390 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 TKTL1P51854 596 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 ATXN3P54252 364 aaPredicted RBP21.48■■□□□ 1.03
COL18A1-207ENST00000473212 MPP3Q13368 585 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 ZNF460Q14592 562 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 PAFAH1B3Q15102 231 aaKnown RBP21.48■■□□□ 1.03
COL18A1-207ENST00000473212 MARVELD2Q8N4S9 558 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 OR6J1Q8NGC5 347 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 USP13Q92995 863 aaPredicted RBP21.48■■□□□ 1.03
COL18A1-207ENST00000473212 RCN3Q96D15 328 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 CELF6Q96J87 481 aaKnown RBP21.48■■□□□ 1.03
COL18A1-207ENST00000473212 LRGUKQ96M69 825 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 RHOBTB2Q9BYZ6 727 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 NUF2Q9BZD4 464 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 ULBP1Q9BZM6 244 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 OCEL1Q9H607 264 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 ADARB2Q9NS39 739 aaKnown RBP21.48■■□□□ 1.03
COL18A1-207ENST00000473212 C20orf96Q9NUD7 363 aaPredicted RBP21.48■■□□□ 1.03
COL18A1-207ENST00000473212 SLC39A10Q9ULF5 831 aa21.48■■□□□ 1.03
COL18A1-207ENST00000473212 RALGAPA2Q2PPJ7 1873 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 DENRO43583 198 aaKnown RBP21.47■■□□□ 1.03
COL18A1-207ENST00000473212 NFKB1P19838 968 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 NOS2P35228 1153 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 AFF1P51825 1210 aaKnown RBP21.47■■□□□ 1.03
COL18A1-207ENST00000473212 CYLC2Q14093 348 aaPredicted RBP21.47■■□□□ 1.03
COL18A1-207ENST00000473212 TMEM198Q66K66 360 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 SEL1L3Q68CR1 1132 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 BNC2Q6ZN30 1099 aaPredicted RBP21.47■■□□□ 1.03
COL18A1-207ENST00000473212 ARHGAP22Q7Z5H3 698 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 KCNMB4Q86W47 210 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 USP33Q8TEY7 942 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 EDEM1Q92611 657 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 ACE2Q9BYF1 805 aaPredicted RBP21.47■■□□□ 1.03
COL18A1-207ENST00000473212 TASP1Q9H6P5 420 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 LRRC4Q9HBW1 653 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 WDR6Q9NNW5 1121 aaKnown RBP21.47■■□□□ 1.03
COL18A1-207ENST00000473212 HDAC3O15379 428 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 NPR3P17342 541 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 ADRA1BP35368 520 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 GRIA4P48058 902 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 TAF6P49848 677 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 RPL14P50914 215 aaKnown RBP21.47■■□□□ 1.03
COL18A1-207ENST00000473212 ZNF423Q2M1K9 1284 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 SLC5A9Q2M3M2 681 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 BNIPLQ7Z465 357 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 WNT8BQ93098 351 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 VPS39Q96JC1 886 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 CNDP1Q96KN2 507 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 MED10Q9BTT4 135 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 COPS7BQ9H9Q2 264 aaPredicted RBP21.47■■□□□ 1.03
COL18A1-207ENST00000473212 VTA1Q9NP79 307 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 RAP2CQ9Y3L5 183 aa21.47■■□□□ 1.03
COL18A1-207ENST00000473212 HUS1O60921 280 aa21.46■■□□□ 1.03
COL18A1-207ENST00000473212 PIGNO95427 931 aa21.46■■□□□ 1.03
COL18A1-207ENST00000473212 ENO3P13929 434 aaPredicted RBP21.46■■□□□ 1.03
COL18A1-207ENST00000473212 DARSP14868 501 aaKnown RBP21.46■■□□□ 1.03
COL18A1-207ENST00000473212 LARP7Q4G0J3 582 aaKnown RBP eCLIP21.46■■□□□ 1.03
COL18A1-207ENST00000473212 ARL13AQ5H913 290 aaPredicted RBP21.46■■□□□ 1.03
COL18A1-207ENST00000473212 SIX6OS1Q8N1H7 587 aa21.46■■□□□ 1.03
COL18A1-207ENST00000473212 RP9Q8TA86 221 aaKnown RBP21.46■■□□□ 1.03
COL18A1-207ENST00000473212 CATSPER2Q96P56 530 aa21.46■■□□□ 1.03
COL18A1-207ENST00000473212 H2AFYO75367 372 aaKnown RBP21.46■■□□□ 1.03
COL18A1-207ENST00000473212 CRTAMO95727 393 aa21.46■■□□□ 1.03
COL18A1-207ENST00000473212 SBK3P0C264 359 aa21.46■■□□□ 1.03
COL18A1-207ENST00000473212 MS4A2Q01362 244 aa21.46■■□□□ 1.03
COL18A1-207ENST00000473212 GK3PQ14409 553 aa21.46■■□□□ 1.03
COL18A1-207ENST00000473212 GRM3Q14832 879 aa21.46■■□□□ 1.03
COL18A1-207ENST00000473212 PIGGQ5H8A4 983 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms