RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TBC1D3IA0A087WXS9 549 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 TBC1D3EA0A087X179 549 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 TBC1D3KA0A087X1G2 549 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 TBC1D3FA6NER0 549 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 TBC1D3LB9A6J9 549 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 C1QTNF3-AMACRE9PGA6 284 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 K7ERQ8 282 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 ATXN1LP0C7T5 689 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 TBC1D3HP0C7X1 549 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 ATP1A3P13637 1013 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 GLDCP23378 1020 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 RRM1P23921 792 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 NSFP46459 744 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 C21orf59P57076 290 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 PPP2CBP62714 309 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 RACK1P63244 317 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 PPP2CAP67775 309 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 PTP4A2Q12974 167 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 CCDC14Q49A88 953 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 KCNT1Q5JUK3 1230 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 ACBD5Q5T8D3 534 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 FAM46CQ5VWP2 391 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 TBC1D3GQ6DHY5 549 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 TBC1D3CQ6IPX1 549 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 C19orf48Q6RUI8 117 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 LINGO4Q6UY18 593 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 DBX2Q6ZNG2 339 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 MARCH9Q86YJ5 346 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 TBC1D3Q8IZP1 549 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 DCAF4L2Q8NA75 395 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 PIP4K2CQ8TBX8 421 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 MDM1Q8TC05 714 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 RHBDD1Q8TEB9 315 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 ERGIC2Q96RQ1 377 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 SPON2Q9BUD6 331 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 ZYG11BQ9C0D3 744 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 AASDHPPTQ9NRN7 309 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 ADAM22Q9P0K1 906 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 HS3ST2Q9Y278 367 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 GPSM3Q9Y4H4 160 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 ATRXP46100 2492 aa16.1■□□□□ 0.17
CCDC88B-205ENST00000472524 PLXNB3Q9ULL4 1909 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 LAMA5O15230 3695 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 C2CD4BA6NLJ0 364 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 GOLGA8CPA6NN73 597 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 ALOX15BO15296 676 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 FLRT2O43155 660 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 RTN2O75298 545 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 UNGP13051 313 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 CCR5P51681 352 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 IL9RQ01113 521 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 CLEC16AQ2KHT3 1053 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 ANO6Q4KMQ2 910 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 ARTNQ5T4W7 220 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 APTXQ7Z2E3 356 aaKnown RBP16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 DRC7Q8IY82 874 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 SELENOOQ9BVL4 669 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 ACE2Q9BYF1 805 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 CCDC86Q9H6F5 360 aaKnown RBP16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 FARP1Q9Y4F1 1045 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 PCDHGB2Q9Y5G2 931 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 CELSR3Q9NYQ7 3312 aa16.09■□□□□ 0.17
CCDC88B-205ENST00000472524 LRRC10BA6NIK2 292 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 H0Y8X5 98 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 CBX4O00257 560 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 WNT9AO14904 365 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 MCF2LO15068 1137 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 SMAD6O43541 496 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 DKK1O94907 266 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 ENDOD1O94919 500 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 WNT1P04628 370 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 CALB1P05937 261 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 CTSLP07711 333 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 KRT3P12035 628 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 MAT2AP31153 395 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 CTSKP43235 329 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 CCT8P50990 548 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 CNTN1Q12860 1018 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 ARL13BQ3SXY8 428 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 AGBL4Q5VU57 503 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 RWDD4Q6NW29 188 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 C22orf39Q6P5X5 142 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 FAM172AQ8WUF8 416 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 SERAC1Q96JX3 654 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 CCDC114Q96M63 670 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 CDC6Q99741 560 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 NAT10Q9H0A0 1025 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 TNKS2Q9H2K2 1166 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 ATP13A1Q9HD20 1204 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 ZNF212Q9UDV6 495 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 PPM1HQ9ULR3 514 aa16.08■□□□□ 0.16
CCDC88B-205ENST00000472524 ILVBLA1L0T0 632 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 KPNA3O00505 521 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 VILLO15195 856 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 SLC7A4O43246 635 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 PLRG1O43660 514 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 GPD1P21695 349 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 CD38P28907 300 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 ADRA1BP35368 520 aa16.07■□□□□ 0.16
CCDC88B-205ENST00000472524 PTPN9P43378 593 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms