RNA–Protein interactions for RNA: ENST00000465560.5

PTCD3-206, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 747 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-206ENST00000465560 ETNK2Q9NVF9 386 aa20.74■□□□□ 0.91
PTCD3-206ENST00000465560 DDX56Q9NY93 547 aaKnown RBP20.74■□□□□ 0.91
PTCD3-206ENST00000465560 CEP192Q8TEP8 1941 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 MACROD2A1Z1Q3 448 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 LRRD1A4D1F6 860 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 GRID2IPA4D2P6 1211 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 ZSCAN5CA6NGD5 496 aaPredicted RBP20.73■□□□□ 0.91
PTCD3-206ENST00000465560 ARHGAP42A6NI28 874 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 ZNF487B1APH4 448 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 KRT1P04264 644 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 CCDC175P0C221 793 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 TNNT1P13805 278 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 CNR2P34972 360 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 SERPINB6P35237 376 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 DLG2Q15700 870 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 ACCSLQ4AC99 568 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 ANKRD20A8PQ5CZ79 823 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 C9orf64Q5T6V5 341 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 TMPRSS6Q8IU80 811 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 LRRC57Q8N9N7 239 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 FAM86C1Q9NVL1 165 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 MFHAS1Q9Y4C4 1052 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 R4GN57 208 aa20.73■□□□□ 0.91
PTCD3-206ENST00000465560 C3orf70A6NLC5 250 aaPredicted RBP20.72■□□□□ 0.91
PTCD3-206ENST00000465560 K7ERQ8 282 aa20.72■□□□□ 0.91
PTCD3-206ENST00000465560 SMAD6O43541 496 aaKnown RBP20.72■□□□□ 0.91
PTCD3-206ENST00000465560 CD160O95971 181 aa20.72■□□□□ 0.91
PTCD3-206ENST00000465560 VAV1P15498 845 aa20.72■□□□□ 0.91
PTCD3-206ENST00000465560 NBL1P41271 181 aa20.72■□□□□ 0.91
PTCD3-206ENST00000465560 NHLH1Q02575 133 aa20.72■□□□□ 0.91
PTCD3-206ENST00000465560 C22orf39Q6P5X5 142 aa20.72■□□□□ 0.91
PTCD3-206ENST00000465560 PCDH19Q8TAB3 1148 aa20.72■□□□□ 0.91
PTCD3-206ENST00000465560 KIAA1524Q8TCG1 905 aa20.72■□□□□ 0.91
PTCD3-206ENST00000465560 CEP44Q9C0F1 390 aa20.72■□□□□ 0.91
PTCD3-206ENST00000465560 SLC6A17Q9H1V8 727 aa20.72■□□□□ 0.91
PTCD3-206ENST00000465560 PRDM16Q9HAZ2 1276 aa20.72■□□□□ 0.91
PTCD3-206ENST00000465560 KRT86O43790 486 aa20.71■□□□□ 0.91
PTCD3-206ENST00000465560 PTMAP06454 111 aaKnown RBP20.71■□□□□ 0.91
PTCD3-206ENST00000465560 PAPOLAP51003 745 aaKnown RBP20.71■□□□□ 0.91
PTCD3-206ENST00000465560 ELAVL3Q14576 367 aaKnown RBP20.71■□□□□ 0.91
PTCD3-206ENST00000465560 ODF2Q5BJF6 829 aa20.71■□□□□ 0.91
PTCD3-206ENST00000465560 KIAA1324Q6UXG2 1013 aaKnown RBP20.71■□□□□ 0.91
PTCD3-206ENST00000465560 ZNF662Q6ZS27 426 aa20.71■□□□□ 0.91
PTCD3-206ENST00000465560 Q6ZVU0 165 aa20.71■□□□□ 0.91
PTCD3-206ENST00000465560 RNF10Q8N5U6 811 aaKnown RBP20.71■□□□□ 0.91
PTCD3-206ENST00000465560 GAB3Q8WWW8 586 aa20.71■□□□□ 0.91
PTCD3-206ENST00000465560 PRCCQ92733 491 aaPredicted RBP20.71■□□□□ 0.91
PTCD3-206ENST00000465560 SIPA1Q96FS4 1042 aa20.71■□□□□ 0.91
PTCD3-206ENST00000465560 RSPH9Q9H1X1 276 aaPredicted RBP20.71■□□□□ 0.91
PTCD3-206ENST00000465560 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.71■□□□□ 0.91
PTCD3-206ENST00000465560 ACTL7AQ9Y615 435 aa20.71■□□□□ 0.91
PTCD3-206ENST00000465560 THADAQ6YHU6 1953 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 DFFAO00273 331 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 HRO43593 1189 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 RPP40O75818 363 aaKnown RBP20.7■□□□□ 0.9
PTCD3-206ENST00000465560 CTNNA1P35221 906 aaKnown RBP20.7■□□□□ 0.9
PTCD3-206ENST00000465560 SRSF5Q13243 272 aaKnown RBP20.7■□□□□ 0.9
PTCD3-206ENST00000465560 PAFAH1B3Q15102 231 aaKnown RBP20.7■□□□□ 0.9
PTCD3-206ENST00000465560 USP39Q53GS9 565 aaKnown RBP20.7■□□□□ 0.9
PTCD3-206ENST00000465560 ZNF776Q68DI1 518 aaPredicted RBP20.7■□□□□ 0.9
PTCD3-206ENST00000465560 NCBP2-AS2Q69YL0 99 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 METTL3Q86U44 580 aaKnown RBP20.7■□□□□ 0.9
PTCD3-206ENST00000465560 KATNAL2Q8IYT4 538 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 ABCA7Q8IZY2 2146 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 SYCE1Q8N0S2 351 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 STK40Q8N2I9 435 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 PCDH20Q8N6Y1 951 aaKnown RBP20.7■□□□□ 0.9
PTCD3-206ENST00000465560 PQLC3Q8N755 202 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 NETO2Q8NC67 525 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 CASKIN2Q8WXE0 1202 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 RNF157Q96PX1 679 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 PDFQ9HBH1 243 aa20.7■□□□□ 0.9
PTCD3-206ENST00000465560 FCF1Q9Y324 198 aaKnown RBP20.7■□□□□ 0.9
PTCD3-206ENST00000465560 ALOX15BO15296 676 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 MFSD11O43934 449 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 PRAMEF11O60813 436 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 RNASEH1O60930 286 aaKnown RBP20.69■□□□□ 0.9
PTCD3-206ENST00000465560 ZNF217O75362 1048 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 ZNF821O75541 412 aaPredicted RBP20.69■□□□□ 0.9
PTCD3-206ENST00000465560 PALMO75781 387 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 P2RY2P41231 377 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 MARCKSL1P49006 195 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 RPS14P62263 151 aaKnown RBP20.69■□□□□ 0.9
PTCD3-206ENST00000465560 ZBTB16Q05516 673 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 BYSLQ13895 437 aaKnown RBP20.69■□□□□ 0.9
PTCD3-206ENST00000465560 MAP7D1Q3KQU3 841 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 INO80DQ53TQ3 878 aaPredicted RBP20.69■□□□□ 0.9
PTCD3-206ENST00000465560 LEKR1Q6ZMV7 388 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 CACUL1Q86Y37 369 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 TP53INP2Q8IXH6 220 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 KRT35Q92764 455 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 ISG20Q96AZ6 181 aaKnown RBP20.69■□□□□ 0.9
PTCD3-206ENST00000465560 RNF25Q96BH1 459 aaPredicted RBP20.69■□□□□ 0.9
PTCD3-206ENST00000465560 SPACA7Q96KW9 195 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 CCDC114Q96M63 670 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 FAM129BQ96TA1 746 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 KCNF1Q9H3M0 494 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 USP36Q9P275 1121 aaKnown RBP20.69■□□□□ 0.9
PTCD3-206ENST00000465560 GUCA1BQ9UMX6 200 aa20.69■□□□□ 0.9
PTCD3-206ENST00000465560 CAPN6Q9Y6Q1 641 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms