RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 DOCK4Q8N1I0 1966 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 BNIP3LO60238 219 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 OPHN1O60890 802 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 SERPING1P05155 500 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 PSMA2P25787 234 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 CD27P26842 260 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 AFF3P51826 1226 aaKnown RBP23.51■■□□□ 1.35
PTPN4-208ENST00000460289 TDRD12Q587J7 1177 aaKnown RBP23.51■■□□□ 1.35
PTPN4-208ENST00000460289 LINGO4Q6UY18 593 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 MINDY1Q8N5J2 469 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 OR14C36Q8NHC7 312 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 EPAS1Q99814 870 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 ACE2Q9BYF1 805 aaPredicted RBP23.51■■□□□ 1.35
PTPN4-208ENST00000460289 ISCUQ9H1K1 167 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 MAGEH1Q9H213 219 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 MRPL47Q9HD33 250 aaKnown RBP23.51■■□□□ 1.35
PTPN4-208ENST00000460289 DNAI1Q9UI46 699 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 HPCAL4Q9UM19 191 aa23.51■■□□□ 1.35
PTPN4-208ENST00000460289 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.51■■□□□ 1.35
PTPN4-208ENST00000460289 TMEM191CA6NGB0 347 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 K7ERQ8 282 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 SLC7A4O43246 635 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 ZMPSTE24O75844 475 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 RNF8O76064 485 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 KCNK5O95279 499 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 CSRP1P21291 193 aaKnown RBP23.5■■□□□ 1.35
PTPN4-208ENST00000460289 KCNA4P22459 653 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 GLDCP23378 1020 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 EPHB2P29323 1055 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 RECQLP46063 649 aaPredicted RBP23.5■■□□□ 1.35
PTPN4-208ENST00000460289 OGDHQ02218 1023 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 TEAD4Q15561 434 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 HGSNATQ68CP4 663 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 NCEH1Q6PIU2 408 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 IL27RAQ6UWB1 636 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP23.5■■□□□ 1.35
PTPN4-208ENST00000460289 OR2A12Q8NGT7 310 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 PIP4K2CQ8TBX8 421 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 FNIP1Q8TF40 1166 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 ZNF653Q96CK0 615 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.5■■□□□ 1.35
PTPN4-208ENST00000460289 CEP44Q9C0F1 390 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 KDM4CQ9H3R0 1056 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 TSPY26PQ9H489 355 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 DNAAF2Q9NVR5 837 aaKnown RBP23.5■■□□□ 1.35
PTPN4-208ENST00000460289 SARDHQ9UL12 918 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 NUMA1Q14980 2115 aa23.5■■□□□ 1.35
PTPN4-208ENST00000460289 ATMINO43313 823 aaPredicted RBP23.49■■□□□ 1.35
PTPN4-208ENST00000460289 SMAD6O43541 496 aaKnown RBP23.49■■□□□ 1.35
PTPN4-208ENST00000460289 RAMP2O60895 175 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 CHRNA3P32297 505 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 DRD3P35462 400 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 SERPINH1P50454 418 aaKnown RBP23.49■■□□□ 1.35
PTPN4-208ENST00000460289 GEMIN4P57678 1058 aaKnown RBP23.49■■□□□ 1.35
PTPN4-208ENST00000460289 CCDC15Q0P6D6 951 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 GRIK2Q13002 908 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 POLD3Q15054 466 aaPredicted RBP23.49■■□□□ 1.35
PTPN4-208ENST00000460289 DNAAF5Q86Y56 855 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 PYROXD2Q8N2H3 581 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 TMIEQ8NEW7 156 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 ARHGEF2Q92974 986 aaKnown RBP23.49■■□□□ 1.35
PTPN4-208ENST00000460289 NCAPGQ9BPX3 1015 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 XPO4Q9C0E2 1151 aaKnown RBP23.49■■□□□ 1.35
PTPN4-208ENST00000460289 CATSPERBQ9H7T0 1116 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 NDFIP2Q9NV92 336 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 NEU3Q9UQ49 428 aa23.49■■□□□ 1.35
PTPN4-208ENST00000460289 TBC1D3DA0A087WVF3 549 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 TBC1D3IA0A087WXS9 549 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 TBC1D3EA0A087X179 549 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 TBC1D3KA0A087X1G2 549 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 TBC1D3FA6NER0 549 aaPredicted RBP23.48■■□□□ 1.35
PTPN4-208ENST00000460289 UPK3BL1B0FP48 263 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 TBC1D3LB9A6J9 549 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 UPK3BL2E5RIL1 263 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 CBFA2T2O43439 604 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 CREB3O43889 395 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 PRNPP04156 253 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 IGHV4-34P06331 123 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 TBC1D3HP0C7X1 549 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 CEACAM1P13688 526 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 HTR7P34969 479 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 ACVRL1P37023 503 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 CCR5P51681 352 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 ADPRHP54922 357 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 ARF5P84085 180 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 SLC14A1Q13336 389 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 TBC1D3GQ6DHY5 549 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 TBC1D3CQ6IPX1 549 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 C22orf39Q6P5X5 142 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 TBC1D3Q8IZP1 549 aaPredicted RBP23.48■■□□□ 1.35
PTPN4-208ENST00000460289 PCDH20Q8N6Y1 951 aaKnown RBP23.48■■□□□ 1.35
PTPN4-208ENST00000460289 RTL3Q8N8U3 475 aaKnown RBP23.48■■□□□ 1.35
PTPN4-208ENST00000460289 FAM131CQ96AQ9 280 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 SLC32A1Q9H598 525 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 TM9SF3Q9HD45 589 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 DONSONQ9NYP3 566 aa23.48■■□□□ 1.35
PTPN4-208ENST00000460289 A0A1W2PPC4 97 aa23.47■■□□□ 1.35
PTPN4-208ENST00000460289 EIF3CLB5ME19 914 aaKnown RBP23.47■■□□□ 1.35
PTPN4-208ENST00000460289 GYPCP04921 128 aa23.47■■□□□ 1.35
PTPN4-208ENST00000460289 ADRB1P08588 477 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms