RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 SARDHQ9UL12 918 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 ANKRD6Q9Y2G4 727 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 FNDC3AQ9Y2H6 1198 aaKnown RBP12.33□□□□□ -0.44
USP40-210ENST00000454354 PCDHGB2Q9Y5G2 931 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 ARID1BQ8NFD5 2236 aaPredicted RBP12.32□□□□□ -0.44
USP40-210ENST00000454354 FAM47DPA6NHR8 397 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 LRRC53A6NM62 1247 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 CCP110O43303 1012 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 SMAD6O43541 496 aaKnown RBP12.32□□□□□ -0.44
USP40-210ENST00000454354 CBFA2T3O75081 653 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 ZMPSTE24O75844 475 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 CTSLP07711 333 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 RHOQP17081 205 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 RRM1P23921 792 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 CTSKP43235 329 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 MAPKAPK2P49137 400 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 ZNF143P52747 638 aaPredicted RBP12.32□□□□□ -0.44
USP40-210ENST00000454354 FAM193AP78312 1265 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 GNA12Q03113 381 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 ZNF423Q2M1K9 1284 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 KIF19Q2TAC6 998 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 KLHL40Q2TBA0 621 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 FILIP1LQ4L180 1135 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 AGBL4Q5VU57 503 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 ACAD10Q6JQN1 1059 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 RETSATQ6NUM9 610 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 DNAJC24Q6P3W2 148 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 C22orf39Q6P5X5 142 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 DBX2Q6ZNG2 339 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 MCOLN2Q8IZK6 566 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 CCDC185Q8N715 623 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 ATP11CQ8NB49 1132 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 TMIEQ8NEW7 156 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 OR7D4Q8NG98 312 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 OR2A12Q8NGT7 310 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 OR14C36Q8NHC7 312 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 BAHD1Q8TBE0 780 aaPredicted RBP12.32□□□□□ -0.44
USP40-210ENST00000454354 CCDC114Q96M63 670 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 CEP44Q9C0F1 390 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 TTYH3Q9C0H2 523 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 IL21RQ9HBE5 538 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 TM7SF3Q9NS93 570 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 SEPT11Q9NVA2 429 aaKnown RBP12.32□□□□□ -0.44
USP40-210ENST00000454354 TMEM248Q9NWD8 314 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 SNX11Q9Y5W9 270 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 PLXNB3Q9ULL4 1909 aa12.32□□□□□ -0.44
USP40-210ENST00000454354 ZZEF1O43149 2961 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 SPAARA0A1B0GVQ0 90 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 FAM72CH0Y354 149 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 K7ERQ8 282 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 CBX4O00257 560 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 VILLO15195 856 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 SH3BP5O60239 455 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 RTN2O75298 545 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 ZNF821O75541 412 aaPredicted RBP12.31□□□□□ -0.44
USP40-210ENST00000454354 LRIG2O94898 1065 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 GLDCP23378 1020 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 NUDT1P36639 197 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 ETFBP38117 255 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 PRKCIP41743 596 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 SERPINH1P50454 418 aaKnown RBP12.31□□□□□ -0.44
USP40-210ENST00000454354 PPP2CBP62714 309 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 PPP2CAP67775 309 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 SIM1P81133 766 aaPredicted RBP12.31□□□□□ -0.44
USP40-210ENST00000454354 ARF5P84085 180 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 SLC20A2Q08357 652 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 CNTN1Q12860 1018 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 FOXC1Q12948 553 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 FAM72AQ5TYM5 149 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 FAM72DQ6L9T8 149 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 LAYNQ6UX15 382 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 LINGO4Q6UY18 593 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.31□□□□□ -0.44
USP40-210ENST00000454354 GLRX5Q86SX6 157 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 TRIM69Q86WT6 500 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 FAM72BQ86X60 149 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 DRC7Q8IY82 874 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 PCDH20Q8N6Y1 951 aaKnown RBP12.31□□□□□ -0.44
USP40-210ENST00000454354 TBC1D31Q96DN5 1066 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 VCPIP1Q96JH7 1222 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 SLC6A18Q96N87 628 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 MCEEQ96PE7 176 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 ACE2Q9BYF1 805 aaPredicted RBP12.31□□□□□ -0.44
USP40-210ENST00000454354 EDEM3Q9BZQ6 932 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 ATP13A1Q9HD20 1204 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 NDFIP2Q9NV92 336 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 AIPL1Q9NZN9 384 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 PCOLCE2Q9UKZ9 415 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 FARP1Q9Y4F1 1045 aaPredicted RBP12.31□□□□□ -0.44
USP40-210ENST00000454354 LRRK1Q38SD2 2015 aa12.31□□□□□ -0.44
USP40-210ENST00000454354 ANKRD11Q6UB99 2663 aaPredicted RBP12.31□□□□□ -0.44
USP40-210ENST00000454354 TDRD6O60522 2096 aaKnown RBP12.3□□□□□ -0.44
USP40-210ENST00000454354 A0A1W2PR77 199 aa12.3□□□□□ -0.44
USP40-210ENST00000454354 ANKRD62A6NC57 917 aa12.3□□□□□ -0.44
USP40-210ENST00000454354 PLK4O00444 970 aa12.3□□□□□ -0.44
USP40-210ENST00000454354 FLRT2O43155 660 aa12.3□□□□□ -0.44
USP40-210ENST00000454354 PCDHGA12O60330 932 aa12.3□□□□□ -0.44
USP40-210ENST00000454354 DFNA5O60443 496 aa12.3□□□□□ -0.44
USP40-210ENST00000454354 TRIM16O95361 564 aa12.3□□□□□ -0.44
USP40-210ENST00000454354 CD160O95971 181 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms