RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 NDUFA10O95299 355 aa20.4■□□□□ 0.86
COL9A3-202ENST00000452372 GOT1P17174 413 aa20.4■□□□□ 0.86
COL9A3-202ENST00000452372 ARHGAP25P42331 645 aa20.4■□□□□ 0.86
COL9A3-202ENST00000452372 POLD3Q15054 466 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-202ENST00000452372 DPYSL2Q16555 572 aa20.4■□□□□ 0.86
COL9A3-202ENST00000452372 HADHQ16836 314 aaKnown RBP20.4■□□□□ 0.86
COL9A3-202ENST00000452372 PPP6R3Q5H9R7 873 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-202ENST00000452372 C9orf64Q5T6V5 341 aa20.4■□□□□ 0.86
COL9A3-202ENST00000452372 TXNRD3NBQ6F5E7 133 aa20.4■□□□□ 0.86
COL9A3-202ENST00000452372 SH2D3CQ8N5H7 860 aa20.4■□□□□ 0.86
COL9A3-202ENST00000452372 FRS2Q8WU20 508 aa20.4■□□□□ 0.86
COL9A3-202ENST00000452372 PRCCQ92733 491 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-202ENST00000452372 PTPRN2Q92932 1015 aa20.4■□□□□ 0.86
COL9A3-202ENST00000452372 ARHGEF2Q92974 986 aaKnown RBP20.4■□□□□ 0.86
COL9A3-202ENST00000452372 SIPA1Q96FS4 1042 aa20.4■□□□□ 0.86
COL9A3-202ENST00000452372 BAG1Q99933 345 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-202ENST00000452372 NOL6Q9H6R4 1146 aaKnown RBP20.4■□□□□ 0.86
COL9A3-202ENST00000452372 LUC7LQ9NQ29 371 aaKnown RBP20.4■□□□□ 0.86
COL9A3-202ENST00000452372 MBD1Q9UIS9 605 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-202ENST00000452372 ASCC3Q8N3C0 2202 aaKnown RBP20.39■□□□□ 0.86
COL9A3-202ENST00000452372 CXorf51AA0A1B0GTR3 108 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 GOLGA6L6A8MZA4 724 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 CBX4O00257 560 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 MT-CO1P00395 513 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 SRCP12931 536 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 GLDCP23378 1020 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 MAN1A1P33908 653 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 ACVRL1P37023 503 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 YBEYP58557 167 aaPredicted RBP20.39■□□□□ 0.85
COL9A3-202ENST00000452372 SLC20A2Q08357 652 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 DLG2Q15700 870 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 SMTNL2Q2TAL5 461 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 IL31Q6EBC2 164 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 RETSATQ6NUM9 610 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 KIAA1324Q6UXG2 1013 aaKnown RBP20.39■□□□□ 0.85
COL9A3-202ENST00000452372 RFX8Q6ZV50 586 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 UMODL1-AS1Q8N2C9 162 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 HSPH1Q92598 858 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 SPACA7Q96KW9 195 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 RSPH9Q9H1X1 276 aaPredicted RBP20.39■□□□□ 0.85
COL9A3-202ENST00000452372 ITM2CQ9NQX7 267 aa20.39■□□□□ 0.85
COL9A3-202ENST00000452372 CWC15Q9P013 229 aaKnown RBP20.39■□□□□ 0.85
COL9A3-202ENST00000452372 TNRC6BQ9UPQ9 1833 aaKnown RBP20.39■□□□□ 0.85
COL9A3-202ENST00000452372 DAPK3O43293 454 aa20.38■□□□□ 0.85
COL9A3-202ENST00000452372 SSR1P43307 286 aaKnown RBP20.38■□□□□ 0.85
COL9A3-202ENST00000452372 CLCN6P51797 869 aa20.38■□□□□ 0.85
COL9A3-202ENST00000452372 RPS14P62263 151 aaKnown RBP20.38■□□□□ 0.85
COL9A3-202ENST00000452372 ZBTB16Q05516 673 aa20.38■□□□□ 0.85
COL9A3-202ENST00000452372 MESDQ14696 234 aa20.38■□□□□ 0.85
COL9A3-202ENST00000452372 ACCSLQ4AC99 568 aa20.38■□□□□ 0.85
COL9A3-202ENST00000452372 RAD9BQ6WBX8 426 aa20.38■□□□□ 0.85
COL9A3-202ENST00000452372 CPNE8Q86YQ8 564 aa20.38■□□□□ 0.85
COL9A3-202ENST00000452372 TMEM139Q8IV31 216 aa20.38■□□□□ 0.85
COL9A3-202ENST00000452372 ATP11CQ8NB49 1132 aa20.38■□□□□ 0.85
COL9A3-202ENST00000452372 FAM129BQ96TA1 746 aa20.38■□□□□ 0.85
COL9A3-202ENST00000452372 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.38■□□□□ 0.85
COL9A3-202ENST00000452372 CEP192Q8TEP8 1941 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 CEP295Q9C0D2 2601 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 PCNX2A6NKB5 2137 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 PATE3B3GLJ2 98 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 H3BRJ5 948 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 ACADMP11310 421 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 ERCC2P18074 760 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 ARL4AP40617 200 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 HADHBP55084 474 aaKnown RBP20.37■□□□□ 0.85
COL9A3-202ENST00000452372 ARF5P84085 180 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 PARP15Q460N3 678 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 N4BP2L1Q5TBK1 243 aaPredicted RBP20.37■□□□□ 0.85
COL9A3-202ENST00000452372 LINGO4Q6UY18 593 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 POLNQ7Z5Q5 900 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 FAM71BQ8TC56 605 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 USP36Q9P275 1121 aaKnown RBP20.37■□□□□ 0.85
COL9A3-202ENST00000452372 HPCAL4Q9UM19 191 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 CYP8B1Q9UNU6 501 aa20.37■□□□□ 0.85
COL9A3-202ENST00000452372 IGHV1OR15-9A0A0B4J2B8 117 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 TMEM110-MUSTN1A8MSY1 372 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 RASA4BC9J798 803 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 K7ERQ8 282 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 RASA4O43374 803 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 SMAD6O43541 496 aaKnown RBP20.36■□□□□ 0.85
COL9A3-202ENST00000452372 KDELR3O43731 214 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 RNASEH1O60930 286 aaKnown RBP20.36■□□□□ 0.85
COL9A3-202ENST00000452372 IPO7O95373 1038 aaKnown RBP20.36■□□□□ 0.85
COL9A3-202ENST00000452372 KRT7P08729 469 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 VAV1P15498 845 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 TPMTP51580 245 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 NDST2P52849 883 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 TAS2R40P59535 323 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 DPYSQ14117 519 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 ZNF776Q68DI1 518 aaPredicted RBP20.36■□□□□ 0.85
COL9A3-202ENST00000452372 STK40Q8N2I9 435 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 LRRC19Q9H756 370 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 PCDH18Q9HCL0 1135 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 CD93Q9NPY3 652 aa20.36■□□□□ 0.85
COL9A3-202ENST00000452372 A0A0A6YYK5 440 aaPredicted RBP20.35■□□□□ 0.85
COL9A3-202ENST00000452372 LNP1A1A4G5 178 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 ZSCAN5CA6NGD5 496 aaPredicted RBP20.35■□□□□ 0.85
COL9A3-202ENST00000452372 CDX4O14627 284 aaPredicted RBP20.35■□□□□ 0.85
COL9A3-202ENST00000452372 MAP3K13O43283 966 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 CD160O95971 181 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms