RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 ZNF776Q68DI1 518 aaPredicted RBP17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 CXorf57Q6NSI4 855 aaKnown RBP17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 TRNP1Q6NT89 227 aa17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 SND1Q7KZF4 910 aaKnown RBP eCLIP17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 RABEPKQ7Z6M1 372 aa17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 REXO1L1PQ8IX06 675 aa17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 ZCCHC9Q8N567 271 aaKnown RBP17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 CADM4Q8NFZ8 388 aa17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 OR52K2Q8NGK3 314 aa17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 GANCQ8TET4 914 aa17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 SNX19Q92543 992 aa17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 ZNF592Q92610 1267 aa17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 ALS2CR12Q96Q35 445 aa17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 RSPH9Q9H1X1 276 aaPredicted RBP17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 FBRSQ9HAH7 460 aa17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 OSGEPQ9NPF4 335 aa17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 EIF2B4Q9UI10 523 aaKnown RBP17.49■□□□□ 0.39
PRPF40A-204ENST00000450303 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 BUB1O43683 1085 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 CNTN5O94779 1100 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 GJB6O95452 261 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 GNSP15586 552 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 PTPN9P43378 593 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 ZNF143P52747 638 aaPredicted RBP17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 ZNF177Q13360 481 aaPredicted RBP17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 SLC25A52Q3SY17 297 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 TTC39BQ5VTQ0 682 aaPredicted RBP17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 MMAAQ8IVH4 418 aaKnown RBP17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 SYCE1Q8N0S2 351 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 MINDY1Q8N5J2 469 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 EMC1Q8N766 993 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 DEFB124Q8NES8 71 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 UBE2Q2Q8WVN8 375 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 DNASE2BQ8WZ79 361 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 NT5C3BQ969T7 300 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 CFAP57Q96MR6 1250 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 CNPY3Q9BT09 278 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 ARHGEF38Q9NXL2 777 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 SUSD2Q9UGT4 822 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 DUSP10Q9Y6W6 482 aa17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 NYNRINQ9P2P1 1898 aaKnown RBP17.48■□□□□ 0.39
PRPF40A-204ENST00000450303 A0A1B0GTW7 788 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 MID1O15344 667 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 KIF5CO60282 957 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 SEMA4FO95754 770 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 F9P00740 461 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 VAV1P15498 845 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 SLC1A1P43005 524 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 ZBTB16Q05516 673 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 SLC12A1Q13621 1099 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 MESDQ14696 234 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 TTC31Q49AM3 519 aaPredicted RBP17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 RAB6CQ53S08 254 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 ALFQ53S48 1182 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 BRMS1LQ5PSV4 323 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 MTERF4Q7Z6M4 381 aaKnown RBP17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 STK40Q8N2I9 435 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 KDM1BQ8NB78 822 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 TPCN2Q8NHX9 752 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 ALG14Q96F25 216 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 FAM129BQ96TA1 746 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 BTBD1Q9H0C5 482 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 RAB6CQ9H0N0 254 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 PABPC3Q9H361 631 aaKnown RBP17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 TRIM10Q9UDY6 481 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 SERGEFQ9UGK8 458 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 SLCO1B1Q9Y6L6 691 aa17.47■□□□□ 0.39
PRPF40A-204ENST00000450303 A0A0U1RQJ8 604 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 EDDM13A0A1B0GTR0 161 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 TARSL2A2RTX5 802 aaKnown RBP17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 FAM47DPA6NHR8 397 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 USP27XA6NNY8 438 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 TMEM110-MUSTN1A8MSY1 372 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 RIOK3O14730 519 aaKnown RBP17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 OPHN1O60890 802 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 RNASEH1O60930 286 aaKnown RBP17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 PROSCO94903 275 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 FSBPO95073 299 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 SYPP08247 313 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 NNMTP40261 264 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 PSMD8P48556 350 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 PLK1P53350 603 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 ATP11AP98196 1134 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 CST6Q15828 149 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 CCDC14Q49A88 953 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 STRADAQ7RTN6 431 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 DAAM2Q86T65 1068 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 HDDC3Q8N4P3 179 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 NIPA2Q8N8Q9 360 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 TRIM58Q8NG06 486 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 PTPRN2Q92932 1015 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 PGAP3Q96FM1 320 aaPredicted RBP17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 CNTNAP3BQ96NU0 1288 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 FEM1AQ9BSK4 669 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 CNTNAP3Q9BZ76 1288 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 FBXL12Q9NXK8 326 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 NCKAP1Q9Y2A7 1128 aa17.46■□□□□ 0.39
PRPF40A-204ENST00000450303 A0A1W2PP55 124 aa17.45■□□□□ 0.38
PRPF40A-204ENST00000450303 BCAT2O15382 392 aaPredicted RBP17.45■□□□□ 0.38
PRPF40A-204ENST00000450303 CLDN11O75508 207 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms