RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 CASS4Q9NQ75 786 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 PSD3Q9NYI0 1048 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.53□□□□□ -0.08
USP39-207ENST00000450066 POC1B-GALNT4F8VUJ3 575 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 PRAMEF11O60813 436 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 RFPL2O75678 378 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 HNRNPA1P09651 372 aaKnown RBP eCLIP14.53□□□□□ -0.08
USP39-207ENST00000450066 PTPN2P17706 415 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 ACVRL1P37023 503 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 SGSHP51688 502 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 SESN2P58004 480 aaPredicted RBP14.53□□□□□ -0.08
USP39-207ENST00000450066 ZNF177Q13360 481 aaPredicted RBP14.53□□□□□ -0.08
USP39-207ENST00000450066 NAPEPLDQ6IQ20 393 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 UNC5AQ6ZN44 842 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 TAOK1Q7L7X3 1001 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 LINC00523Q86TU6 105 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 FAM217AQ8IXS0 508 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 OR52K1Q8NGK4 314 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 PABPC5Q96DU9 382 aaKnown RBP14.53□□□□□ -0.08
USP39-207ENST00000450066 DHRS4Q9BTZ2 278 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 HCFC1R1Q9NWW0 138 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 PSMC3IPQ9P2W1 217 aaPredicted RBP14.53□□□□□ -0.08
USP39-207ENST00000450066 LSM7Q9UK45 103 aaKnown RBP14.53□□□□□ -0.08
USP39-207ENST00000450066 ZNF510Q9Y2H8 683 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 TBC1D30Q9Y2I9 924 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 TTLL3Q9Y4R7 772 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 DENND4CQ5VZ89 1909 aa14.53□□□□□ -0.08
USP39-207ENST00000450066 LAMA3Q16787 3333 aa14.52□□□□□ -0.08
USP39-207ENST00000450066 ILVBLA1L0T0 632 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 A6NNZ2 444 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 GFRA2O00451 464 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 TSPAN3O60637 253 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 EPCAMP16422 314 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 MGAT1P26572 445 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 ATP1A2P50993 1020 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 SLC10A7Q0GE19 358 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 NR1H3Q13133 447 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 GPM6BQ13491 265 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 TUBB8Q3ZCM7 444 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 CASC4Q6P4E1 433 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 HTR3DQ70Z44 454 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 CYS1Q717R9 158 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 CYP4X1Q8N118 509 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 DNAAF3Q8N9W5 541 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 SPATA22Q8NHS9 363 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 GSDMBQ8TAX9 411 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 ARNTL2Q8WYA1 636 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 ZNF599Q96NL3 588 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 SLC46A2Q9BY10 475 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 SLC25A51Q9H1U9 297 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 PIH1D1Q9NWS0 290 aaKnown RBP14.52□□□□□ -0.09
USP39-207ENST00000450066 UBP1Q9NZI7 540 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 BFARQ9NZS9 450 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 TBK1Q9UHD2 729 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 DPP7Q9UHL4 492 aa14.52□□□□□ -0.09
USP39-207ENST00000450066 A0A0D9SEW6 157 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 NRG2O14511 850 aaPredicted RBP14.51□□□□□ -0.09
USP39-207ENST00000450066 USP12O75317 370 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 GJA1P17302 382 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 PGAM1P18669 254 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 PRKCHP24723 683 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 DDX6P26196 483 aaKnown RBP eCLIP14.51□□□□□ -0.095e-6■■■■■ 34.8
USP39-207ENST00000450066 CCR2P41597 374 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 GEMP55040 296 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 OLIG2Q13516 323 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 KBTBD12Q3ZCT8 623 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 STXBP5Q5T5C0 1151 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 STEAP4Q687X5 459 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 EXOC3L1Q86VI1 746 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 LEMD2Q8NC56 503 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 CNOT10Q9H9A5 744 aaKnown RBP14.51□□□□□ -0.09
USP39-207ENST00000450066 SOBPA7XYQ1 873 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 XYLBO75191 536 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 MT-CYBP00156 380 aaPredicted RBP14.51□□□□□ -0.09
USP39-207ENST00000450066 C1QAP02745 245 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 RHOCP08134 193 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 NPY2RP49146 381 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 CRADDP78560 199 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 CDH17Q12864 832 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 LBRQ14739 615 aaKnown RBP14.51□□□□□ -0.09
USP39-207ENST00000450066 EFTUD2Q15029 972 aaKnown RBP eCLIP14.51□□□□□ -0.093e-8■■□□□ 13.7
USP39-207ENST00000450066 TMCO4Q5TGY1 634 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 ADGRD1Q6QNK2 874 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 ZNF783Q6ZMS7 281 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 HJURPQ8NCD3 748 aaPredicted RBP14.51□□□□□ -0.09
USP39-207ENST00000450066 OR52K2Q8NGK3 314 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 SHKBP1Q8TBC3 707 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 IMP4Q96G21 291 aaKnown RBP14.51□□□□□ -0.09
USP39-207ENST00000450066 PAFAH2Q99487 392 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 CAPS2Q9BXY5 557 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 PDFQ9HBH1 243 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 NT5MQ9NPB1 228 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 SYBUQ9NX95 663 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 ZDHHC7Q9NXF8 308 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 CFAP97Q9P2B7 532 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 DNMT3BQ9UBC3 853 aaKnown RBP14.51□□□□□ -0.09
USP39-207ENST00000450066 ARHGAP26Q9UNA1 814 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 YBX2Q9Y2T7 364 aaKnown RBP14.51□□□□□ -0.09
USP39-207ENST00000450066 ACTL7BQ9Y614 415 aa14.51□□□□□ -0.09
USP39-207ENST00000450066 CHD5Q8TDI0 1954 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms