RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 MAPKAPK2P49137 400 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 METAP1P53582 386 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 AIF1P55008 147 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 ARF5P84085 180 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 SLC20A2Q08357 652 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 SEMA3BQ13214 749 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 RETSATQ6NUM9 610 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 OR2A12Q8NGT7 310 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 ARHGEF2Q92974 986 aaKnown RBP13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 BIRC7Q96CA5 298 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 TRIM11Q96F44 468 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 GPATCH2LQ9NWQ4 482 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 ARHGAP20Q9P2F6 1191 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 SUSD2Q9UGT4 822 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 FZD4Q9ULV1 537 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 SLCO1B1Q9Y6L6 691 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 DOCK9Q9BZ29 2069 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 PLXNA2O75051 1894 aa13.02□□□□□ -0.32
PRPF40A-203ENST00000448428 A0A1B0GTW7 788 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 FAM47DPA6NHR8 397 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 PLK4O00444 970 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 ARHGAP33O14559 1287 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 ALOX15BO15296 676 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 BCAT2O15382 392 aaPredicted RBP13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 CBFA2T2O43439 604 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 ZNF821O75541 412 aaPredicted RBP13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 FSBPO95073 299 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 CD160O95971 181 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 EPHB2P29323 1055 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 HNRNPH3P31942 346 aaKnown RBP13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 DRD3P35462 400 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 CLCN6P51797 869 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 KIAA0895LQ68EN5 471 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 SPECC1LQ69YQ0 1117 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 NCEH1Q6PIU2 408 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 DSG4Q86SJ6 1040 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 VPS36Q86VN1 386 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 ZCCHC9Q8N567 271 aaKnown RBP13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 PIP4K2CQ8TBX8 421 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 FNIP1Q8TF40 1166 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 SNX19Q92543 992 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 PEBP4Q96S96 227 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 GTPBP2Q9BX10 602 aaKnown RBP13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 MAGEH1Q9H213 219 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 TNKS2Q9H2K2 1166 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 NOL6Q9H6R4 1146 aaKnown RBP13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 MRPL47Q9HD33 250 aaKnown RBP13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 PCSK1NQ9UHG2 260 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 ACTL7AQ9Y615 435 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 SCINQ9Y6U3 715 aa13.02□□□□□ -0.33
PRPF40A-203ENST00000448428 ASCC3Q8N3C0 2202 aaKnown RBP13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 LAMA1P25391 3075 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 MED19A0JLT2 244 aaPredicted RBP13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 C10orf142B7Z368 130 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 RNF103O00237 685 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 RAMP2O60895 175 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 RNF8O76064 485 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 IGHV4-34P06331 123 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 CTSLP07711 333 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 SYPP08247 313 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 MIPP30301 263 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 CHRNA3P32297 505 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 ETFBP38117 255 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 EIF4A3P38919 411 aaKnown RBP13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 SERPINH1P50454 418 aaKnown RBP13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 FOXK2Q01167 660 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 CNTN1Q12860 1018 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 POLD3Q15054 466 aaPredicted RBP13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 CA9Q16790 459 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 UAP1L1Q3KQV9 507 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 POM121L1PQ3SYA9 428 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 PPM1JQ5JR12 505 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 CCDC122Q5T0U0 273 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 ERMARDQ5T6L9 678 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 FAM46CQ5VWP2 391 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 DAB2IPQ5VWQ8 1189 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 C22orf39Q6P5X5 142 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 ALKBH5Q6P6C2 394 aaKnown RBP13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 CYP4V2Q6ZWL3 525 aaPredicted RBP13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 VSTM4Q8IW00 320 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 RTL3Q8N8U3 475 aaKnown RBP13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 CHST14Q8NCH0 376 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 OR2I1PQ8NGU4 316 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 OR2T34Q8NGX1 318 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 OR14C36Q8NHC7 312 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 FAM131CQ96AQ9 280 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 EPAS1Q99814 870 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 ORAI3Q9BRQ5 295 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 SNRNP25Q9BV90 132 aaKnown RBP13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 THAP2Q9H0W7 228 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 DHX35Q9H5Z1 703 aaKnown RBP13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 AP4E1Q9UPM8 1137 aa13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 FARP1Q9Y4F1 1045 aaPredicted RBP13.01□□□□□ -0.33
PRPF40A-203ENST00000448428 CXorf51AA0A1B0GTR3 108 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 LRRC72A6NJI9 287 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 WASH4PA8MWX3 477 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 C1QTNF3-AMACRE9PGA6 284 aa13□□□□□ -0.33
PRPF40A-203ENST00000448428 KDELR3O43731 214 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms