RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 CCT7Q99832 543 aa12.7□□□□□ -0.38
CDH3-202ENST00000429102 GCOM2Q9BZD3 368 aaPredicted RBP12.7□□□□□ -0.38
CDH3-202ENST00000429102 GPAMQ9HCL2 828 aa12.7□□□□□ -0.38
CDH3-202ENST00000429102 EGFL7Q9UHF1 273 aa12.7□□□□□ -0.38
CDH3-202ENST00000429102 SFMBT1Q9UHJ3 866 aa12.7□□□□□ -0.38
CDH3-202ENST00000429102 GJD2Q9UKL4 321 aa12.7□□□□□ -0.38
CDH3-202ENST00000429102 FAF1Q9UNN5 650 aaPredicted RBP12.7□□□□□ -0.38
CDH3-202ENST00000429102 MTF2Q9Y483 593 aaPredicted RBP12.7□□□□□ -0.38
CDH3-202ENST00000429102 H3BNX3 289 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 H3BRB1 525 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 NRP1O14786 923 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 TSPAN1O60635 241 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 THRAP10827 490 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 SERPINB8P50452 374 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 DYNC1I2Q13409 638 aaKnown RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 LAMC2Q13753 1193 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 DPYSL2Q16555 572 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 CLEC6AQ6EIG7 209 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 KLHDC10Q6PID8 442 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 FSTL5Q8N475 847 aaPredicted RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 FAM192AQ9GZU8 254 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 TUT1Q9H6E5 874 aaKnown RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 LRRC40Q9H9A6 602 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 SPON1Q9HCB6 807 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 CDYLQ9Y232 598 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 ZFXP17010 805 aaPredicted RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 CES1P23141 567 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 MYLK3Q32MK0 819 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 METTL25Q8N6Q8 603 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 ZFP28Q8NHY6 868 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 SERPINI1Q99574 410 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 ULBP1Q9BZM6 244 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 ASB7Q9H672 318 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 NOL11Q9H8H0 719 aaKnown RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 FBRSL1Q9HCM7 1045 aaKnown RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 AKAP10O43572 662 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 CCNT2O60583 730 aaKnown RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 HUS1O60921 280 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 MCF2P10911 925 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 TPSB2P20231 275 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 RPL14P50914 215 aaKnown RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 PLOD1Q02809 727 aaPredicted RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 NIPAL4Q0D2K0 466 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 BST2Q10589 180 aaKnown RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 ZBTB17Q13105 803 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 TPSAB1Q15661 275 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 MAP7D1Q3KQU3 841 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 KCTD21Q4G0X4 260 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 WSCD1Q658N2 575 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 ESRP1Q6NXG1 681 aaKnown RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 TMEM110Q86TL2 294 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 LCA5Q86VQ0 697 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 NAT16Q8N8M0 369 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 KLHL32Q96NJ5 620 aa12.69□□□□□ -0.38
CDH3-202ENST00000429102 FRMD8Q9BZ67 464 aaPredicted RBP12.69□□□□□ -0.38
CDH3-202ENST00000429102 BPTFQ12830 3046 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 ZNF839A8K0R7 811 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 MDM4O15151 490 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 USP2O75604 605 aaPredicted RBP12.68□□□□□ -0.38
CDH3-202ENST00000429102 TIPRLO75663 272 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 RNASEH2AO75792 299 aaKnown RBP12.68□□□□□ -0.38
CDH3-202ENST00000429102 MTTPP55157 894 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 TBCCQ15814 346 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 FBXO47Q5MNV8 452 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 NPWQ8N729 165 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 APPL2Q8NEU8 664 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 BEST2Q8NFU1 509 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 RBBP8Q99708 897 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 PCDHB12Q9Y5F1 795 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 RGSL1A5PLK6 1076 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 YJEFN3A6XGL0 299 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 G3V2L1 256 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 PDLIM1O00151 329 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 TSPAN3O60637 253 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 PTPN3P26045 913 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 SLC12A1Q13621 1099 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 TMEM259Q4ZIN3 620 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 EPGNQ6UW88 154 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 OR6P1Q8NGX9 317 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 TMEM79Q9BSE2 394 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 COQ10BQ9H8M1 238 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 PSMD13Q9UNM6 376 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 ZNF195O14628 629 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 HDAC3O15379 428 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 DDNO94850 711 aaPredicted RBP12.68□□□□□ -0.38
CDH3-202ENST00000429102 TFAP2AP05549 437 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 ME2P23368 584 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 ATICP31939 592 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 MAXP61244 160 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 GRM1Q13255 1194 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 KIF19Q2TAC6 998 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 AAGABQ6PD74 315 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 CPNE9Q8IYJ1 553 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 NUP93Q8N1F7 819 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 ARHGAP18Q8N392 663 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 CPNE1Q99829 537 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 CPA4Q9UI42 421 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 DSEQ9UL01 958 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 ADAMTS5Q9UNA0 930 aa12.68□□□□□ -0.38
CDH3-202ENST00000429102 PTGDR2Q9Y5Y4 395 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms