RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 DCDC2Q9UHG0 476 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 WASF2Q9Y6W5 498 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 EME2A4GXA9 379 aaPredicted RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 I6L893 689 aaPredicted RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 ZBTB24O43167 697 aaPredicted RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 TBX10O75333 385 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 SERPINE1P05121 402 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 FYNP06241 537 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 SERPINA6P08185 405 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 ACRP10323 421 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 COL6A1P12109 1028 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 CSF2RAP15509 400 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 EN2P19622 333 aaPredicted RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 SAT1P21673 171 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 GARSP41250 739 aaKnown RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 CACNA2D1P54289 1103 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 PAFAH1B3Q15102 231 aaKnown RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 HSP90AA5PQ58FG0 334 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 VWA5B1Q5TIE3 1220 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 CYS1Q717R9 158 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 PDZD4Q76G19 769 aaPredicted RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 SCUBE1Q8IWY4 988 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 DCLK2Q8N568 766 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 CELF6Q96J87 481 aaKnown RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 SLC2A13Q96QE2 648 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 CCDC106Q9BWC9 280 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 SNX15Q9NRS6 342 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 TMEM161AQ9NX61 479 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 APOBEC2Q9Y235 224 aaKnown RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 TBKBP1A7MCY6 615 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 PROCP04070 461 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 VHLP40337 213 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 SLC34A1Q06495 639 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 DLG2Q15700 870 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 CERCAMQ5T4B2 595 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 FAM91A1Q658Y4 838 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 LIMS2Q7Z4I7 341 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 NECAB2Q7Z6G3 386 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 LMNTD2Q8IXW0 634 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 ULK2Q8IYT8 1036 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.88□□□□□ -0.67
CUX1-205ENST00000425244 NRG4Q8WWG1 115 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 RNF34Q969K3 372 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 NT5C3BQ969T7 300 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 MFSD3Q96ES6 412 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 PCED1BQ96HM7 432 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 ANKRD27Q96NW4 1050 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 TSPAN18Q96SJ8 248 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 SMOQ99835 787 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 MMADHCQ9H3L0 296 aaPredicted RBP10.88□□□□□ -0.67
CUX1-205ENST00000425244 LRRC40Q9H9A6 602 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 TMEM30AQ9NV96 361 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 IGSF9Q9P2J2 1179 aa10.88□□□□□ -0.67
CUX1-205ENST00000425244 SZT2Q5T011 3432 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 XIRP2A4UGR9 3374 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 ARHGAP42A6NI28 874 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 RALBP11234 206 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 RAG1P15918 1043 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 NCF2P19878 526 aaPredicted RBP10.87□□□□□ -0.67
CUX1-205ENST00000425244 ATP6V1C1P21283 382 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 RPL9P32969 192 aaKnown RBP10.87□□□□□ -0.67
CUX1-205ENST00000425244 ZBTB17Q13105 803 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 SPANXN3Q5MJ09 141 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 C6orf163Q5TEZ5 329 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 C1orf146Q5VVC0 180 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 LRRC74BQ6ZQY2 392 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 RIPOR1Q6ZS17 1223 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 FAM35AQ86V20 835 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 USP33Q8TEY7 942 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 SCG3Q8WXD2 468 aaKnown RBP10.87□□□□□ -0.67
CUX1-205ENST00000425244 KCTD13Q8WZ19 329 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 CPNE1Q99829 537 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 SEZ6LQ9BYH1 1024 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 ACSS2Q9NR19 701 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 COPG2Q9UBF2 871 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 ZNF638Q14966 1978 aaKnown RBP10.87□□□□□ -0.67
CUX1-205ENST00000425244 TADA2AO75478 443 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 PRKCGP05129 697 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 CPA3P15088 417 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 NFKB1P19838 968 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 MX2P20592 715 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 ARRB2P32121 409 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 RPS6KA3P51812 740 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 DAOAP59103 153 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 SLC25A3Q00325 362 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 IRF9Q00978 393 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 ATG14Q6ZNE5 492 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 PLD6Q8N2A8 252 aaKnown RBP10.87□□□□□ -0.67
CUX1-205ENST00000425244 TOX2Q96NM4 488 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 TMEM209Q96SK2 561 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 GORASP1Q9BQQ3 440 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 OXCT2Q9BYC2 517 aaPredicted RBP10.87□□□□□ -0.67
CUX1-205ENST00000425244 WDR6Q9NNW5 1121 aaKnown RBP10.87□□□□□ -0.67
CUX1-205ENST00000425244 C20orf96Q9NUD7 363 aaPredicted RBP10.87□□□□□ -0.67
CUX1-205ENST00000425244 TBX21Q9UL17 535 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 EYSQ5T1H1 3165 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 C5orf42Q9H799 3197 aa10.87□□□□□ -0.67
CUX1-205ENST00000425244 TRIM43BA6NCK2 446 aa10.86□□□□□ -0.67
CUX1-205ENST00000425244 AP2A1O95782 977 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms