RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 KLHDC7AQ5VTJ3 777 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 FAM46CQ5VWP2 391 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 KANSL1Q7Z3B3 1105 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 PDZD3Q86UT5 571 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 ERICH1Q86X53 443 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 EMC1Q8N766 993 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 MFSD2AQ8NA29 543 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 TMEM35BQ8NCS4 154 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 OR2A12Q8NGT7 310 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 GRIN3AQ8TCU5 1115 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 FAM131CQ96AQ9 280 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 DCBLD2Q96PD2 775 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 SPON2Q9BUD6 331 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 MAGEB5Q9BZ81 275 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 DRGXA6NNA5 263 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 E9PAM4 449 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 RFPL3O75679 317 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 MYF5P13349 255 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 JUPP14923 745 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 CLDN2P57739 230 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 KRT83P78385 493 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 TARDBPQ13148 414 aaKnown RBP eCLIP11.85□□□□□ -0.51
USP4-204ENST00000416417 STAT4Q14765 748 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 ARSIQ5FYB1 569 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 BRMS1LQ5PSV4 323 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 NAA35Q5VZE5 725 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 SEL1L3Q68CR1 1132 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 TRIM69Q86WT6 500 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 FAM131BQ86XD5 332 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 SLC20A1Q8WUM9 679 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 NT5C3BQ969T7 300 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 C18orf8Q96DM3 657 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 UCKL1Q9NWZ5 548 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 TAB2Q9NYJ8 693 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 STAP1Q9ULZ2 295 aa11.85□□□□□ -0.51
USP4-204ENST00000416417 ANKRD11Q6UB99 2663 aaPredicted RBP11.84□□□□□ -0.51
USP4-204ENST00000416417 CABIN1Q9Y6J0 2220 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 TRIM38O00635 465 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 SLC7A4O43246 635 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 THEGLP0DJG4 465 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 OR1E1P30953 314 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 CDH5P33151 784 aaPredicted RBP11.84□□□□□ -0.51
USP4-204ENST00000416417 GABRB2P47870 512 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 VASPP50552 380 aaPredicted RBP11.84□□□□□ -0.51
USP4-204ENST00000416417 DNA2P51530 1060 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 SNX16P57768 344 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 ATP11AP98196 1134 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 ZNF284Q2VY69 593 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 SLC25A52Q3SY17 297 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 ZNF542PQ5EBM4 170 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 HES3Q5TGS1 186 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 SFMBT2Q5VUG0 894 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 C22orf39Q6P5X5 142 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 KDM7AQ6ZMT4 941 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 LEKR1Q6ZMV7 388 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 DPY19L3Q6ZPD9 716 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 DRC7Q8IY82 874 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 PDCD7Q8N8D1 485 aaKnown RBP11.84□□□□□ -0.51
USP4-204ENST00000416417 OR13H1Q8NG92 308 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 TSC1Q92574 1164 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 PPP1R9BQ96SB3 815 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 C2orf49Q9BVC5 232 aaPredicted RBP11.84□□□□□ -0.51
USP4-204ENST00000416417 NAA15Q9BXJ9 866 aaKnown RBP11.84□□□□□ -0.51
USP4-204ENST00000416417 KDM4CQ9H3R0 1056 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 METTL5Q9NRN9 209 aaKnown RBP11.84□□□□□ -0.51
USP4-204ENST00000416417 ZFR2Q9UPR6 939 aaKnown RBP11.84□□□□□ -0.51
USP4-204ENST00000416417 HS3ST2Q9Y278 367 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 CACNA1GO43497 2377 aa11.84□□□□□ -0.51
USP4-204ENST00000416417 DOCK9Q9BZ29 2069 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 PRAMEF26H0Y7S4 382 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 ALOX15BO15296 676 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 FFAR2O15552 330 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 ZNF821O75541 412 aaPredicted RBP11.83□□□□□ -0.52
USP4-204ENST00000416417 LEFTY1O75610 366 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 GFPT2O94808 682 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 PCDH8O95206 1070 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 UCHL3P15374 230 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 GKP32189 559 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 ACVRL1P37023 503 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 RXRGP48443 463 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 BPIFB4P59827 614 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 NOMO3P69849 1222 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 SEMG2Q02383 582 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 CDO1Q16878 200 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 C15orf59Q2T9L4 293 aaPredicted RBP11.83□□□□□ -0.52
USP4-204ENST00000416417 SETMARQ53H47 684 aaPredicted RBP11.83□□□□□ -0.52
USP4-204ENST00000416417 SOWAHCQ53LP3 525 aaPredicted RBP11.83□□□□□ -0.52
USP4-204ENST00000416417 LRRC31Q6UY01 552 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 TMPRSS12Q86WS5 348 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 ZDHHC17Q8IUH5 632 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 FAM114A1Q8IWE2 563 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 SLC25A45Q8N413 288 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 DCAF4L2Q8NA75 395 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 OR6K2Q8NGY2 324 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 PGAP3Q96FM1 320 aaPredicted RBP11.83□□□□□ -0.52
USP4-204ENST00000416417 KLHDC7BQ96G42 594 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 CALN1Q9BXU9 219 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 VPS16Q9H269 839 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 ERVMER34-1Q9H9K5 563 aa11.83□□□□□ -0.52
USP4-204ENST00000416417 PREBQ9HCU5 417 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms