RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SEMA3BQ13214 749 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 KIAA0319Q5VV43 1072 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 KIAA1841Q6NSI8 718 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 KYAT3Q6YP21 454 aaKnown RBP15.13■□□□□ 0.01
USP4-203ENST00000415188 PBXIP1Q96AQ6 731 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 GPR62Q9BZJ7 368 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 ULBP1Q9BZM6 244 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 CRTAC1Q9NQ79 661 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 SIRPGQ9P1W8 387 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 STK39Q9UEW8 545 aa15.13■□□□□ 0.01
USP4-203ENST00000415188 TDRD15B5MCY1 1934 aaKnown RBP15.12■□□□□ 0.01
USP4-203ENST00000415188 CAPN9O14815 690 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 TEX28O15482 410 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 HAUS5O94927 633 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 MX2P20592 715 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 BGNP21810 368 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 ACAT1P24752 427 aaKnown RBP15.12■□□□□ 0.01
USP4-203ENST00000415188 PTPN4P29074 926 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 AP1B1Q10567 949 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 KRT72Q14CN4 511 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 SPANXN3Q5MJ09 141 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 ATAT1Q5SQI0 421 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 CLNKQ7Z7G1 428 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 MPP5Q8N3R9 675 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 KIF2BQ8N4N8 673 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 CFAP61Q8NHU2 1237 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 PTPRN2Q92932 1015 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 SMARCD1Q96GM5 515 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 OXNAD1Q96HP4 312 aaPredicted RBP15.12■□□□□ 0.01
USP4-203ENST00000415188 VAT1Q99536 393 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 LGMNQ99538 433 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 PAAF1Q9BRP4 392 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 SIKE1Q9BRV8 207 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 COLEC11Q9BWP8 271 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 SFXN1Q9H9B4 322 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 PIGVQ9NUD9 493 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 KCNK4Q9NYG8 393 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 FBXW11Q9UKB1 542 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 TRHDEQ9UKU6 1024 aa15.12■□□□□ 0.01
USP4-203ENST00000415188 ZNF638Q14966 1978 aaKnown RBP15.12■□□□□ 0.01
USP4-203ENST00000415188 WDFY4Q6ZS81 3184 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 ZNF318Q5VUA4 2279 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 ARHGEF37A1IGU5 675 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 AP3B1O00203 1094 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 BEST1O76090 585 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 LTFP02788 710 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 SERPINB6P35237 376 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 MAP3K7CLP57077 242 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 TPI1P60174 286 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 DSG1Q02413 1049 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 ZNF33AQ06730 810 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 SIGLEC14Q08ET2 396 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 WASHC5Q12768 1159 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 TAF1BQ53T94 588 aaPredicted RBP15.11■□□□□ 0.01
USP4-203ENST00000415188 ITPRIPL1Q6GPH6 555 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 FUT10Q6P4F1 479 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 TRMT10BQ6PF06 316 aaKnown RBP15.11■□□□□ 0.01
USP4-203ENST00000415188 DSTYKQ6XUX3 929 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 BEND5Q7L4P6 421 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 BMP8AQ7Z5Y6 402 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 GPR149Q86SP6 731 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 KREMEN2Q8NCW0 462 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 RFWD2Q8NHY2 731 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 SLC7A14Q8TBB6 771 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 E2F7Q96AV8 911 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 SKA1Q96BD8 255 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 ASIC4Q96FT7 647 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 THOC1Q96FV9 657 aaKnown RBP15.11■□□□□ 0.01
USP4-203ENST00000415188 SMOQ99835 787 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 MAGEB5Q9BZ81 275 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 SMOC2Q9H3U7 446 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 WDR6Q9NNW5 1121 aaKnown RBP15.11■□□□□ 0.01
USP4-203ENST00000415188 MAN1C1Q9NR34 630 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 ADAM28Q9UKQ2 775 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 MFHAS1Q9Y4C4 1052 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 PATJQ8NI35 1801 aa15.11■□□□□ 0.01
USP4-203ENST00000415188 WDR27A2RRH5 827 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 CASTOR2A6NHX0 329 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 CREB3O43889 395 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 GLRA3O75311 464 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 FYNP06241 537 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 ASGR2P07307 311 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 ADH1AP07327 375 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 DLDP09622 509 aaKnown RBP15.1■□□□□ 0.01
USP4-203ENST00000415188 T-ENOLP0DO92 83 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 ODC1P11926 461 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 TARSP26639 723 aaKnown RBP15.1■□□□□ 0.01
USP4-203ENST00000415188 GARSP41250 739 aaKnown RBP15.1■□□□□ 0.01
USP4-203ENST00000415188 PITX1P78337 314 aaPredicted RBP15.1■□□□□ 0.01
USP4-203ENST00000415188 PPIDQ08752 370 aaKnown RBP15.1■□□□□ 0.01
USP4-203ENST00000415188 NME3Q13232 169 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 CRYMQ14894 314 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 INSCQ1MX18 579 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 SYPL2Q5VXT5 272 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 MTDHQ86UE4 582 aaKnown RBP15.1■□□□□ 0.01
USP4-203ENST00000415188 METTL23Q86XA0 190 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 NDUFAF2Q8N183 169 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 ZNF567Q8N184 647 aa15.1■□□□□ 0.01
USP4-203ENST00000415188 PDCD7Q8N8D1 485 aaKnown RBP15.1■□□□□ 0.01
USP4-203ENST00000415188 TDRD5Q8NAT2 981 aaKnown RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms