RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SLFN11Q7Z7L1 901 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 SLCO6A1Q86UG4 719 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 SEMA4DQ92854 862 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 CLK4Q9HAZ1 481 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 PSME2Q9UL46 239 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 AK5Q9Y6K8 562 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 TRIM64BA6NI03 449 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 PLK4O00444 970 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 OXCT1P55809 520 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 ABCC2Q92887 1545 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 EYA4O95677 639 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 SPERTQ8NA61 448 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 ANKRD7Q92527 254 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 MGME1Q9BQP7 344 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 RAVER2Q9HCJ3 691 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 RENBPP51606 427 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 GPAT3Q53EU6 434 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 ZZZ3Q8IYH5 903 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 FAM98AQ8NCA5 519 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 ZNF668Q96K58 619 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 SPATA9Q9BWV2 254 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 TAF6LQ9Y6J9 622 aa13.51□□□□□ -0.25
CCDC88A-204ENST00000413716 PCDH8O95206 1070 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 ITGA4P13612 1032 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 OGNP20774 298 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 CCNG2Q16589 344 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 GXYLT1Q4G148 440 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 CNSTQ6PJW8 725 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 ADGRF4Q8IZF3 695 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 SYN2Q92777 582 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 EXD2Q9NVH0 621 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 DGAT1O75907 488 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 TCF7P36402 384 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 RPL3P39023 403 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 ALDH7A1P49419 539 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 CEBPAP49715 358 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 RGS19P49795 217 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 PRKCEQ02156 737 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 SGCGQ13326 291 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 HYIQ5T013 277 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 RBM20Q5T481 1227 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 TPCN2Q8NHX9 752 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 CASKIN2Q8WXE0 1202 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 UBE2E3Q969T4 207 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 PNMA5Q96PV4 448 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 TRIM9Q9C026 710 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 TMBIM4Q9HC24 238 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 SAR1AQ9NR31 198 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 HOXC12P31275 282 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 ABCA11PQ4W5N1 156 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 RBM44Q6ZP01 1051 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 SH3D21A4FU49 640 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 RPS6KA4O75676 772 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 EGFRP00533 1210 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 CKBP12277 381 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 GLB1LQ6UWU2 654 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 DDIT4Q9NX09 232 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 VPS28Q9UK41 221 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 VPS4AQ9UN37 437 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 ALG5Q9Y673 324 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 CDHR2Q9BYE9 1310 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 PRKAB2O43741 272 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 LRIG2O94898 1065 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 SPIBQ01892 262 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 PHF20Q9BVI0 1012 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 LMAN2LQ9H0V9 348 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 SPAG4Q9NPE6 437 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 PRR12Q9ULL5 1215 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 MYH13Q9UKX3 1938 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 GSTT2BP0CG30 244 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 PDK3Q15120 406 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 TBC1D25Q3MII6 688 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 FRMD7Q6ZUT3 714 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 SFRP1Q8N474 314 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 ZNF180Q9UJW8 692 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 RBMX2Q9Y388 322 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 PRAMEF33A0A0G2JMD5 474 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 KANTRA0A1W2PQU2 76 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 BTBD19C9JJ37 291 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 PRAMEF10O60809 474 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 SRGNP10124 158 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 SCN1BQ07699 218 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 NAA30Q147X3 362 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 NOL9Q5SY16 702 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 NLGN1Q8N2Q7 840 aa13.5□□□□□ -0.25
CCDC88A-204ENST00000413716 GTPBP1O00178 669 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 EPORP19235 508 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 DALRD3Q5D0E6 543 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 WRNIP1Q96S55 665 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 RNF146Q9NTX7 359 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 MRASO14807 208 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 HOXB6P17509 224 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 N4BP2L1Q5TBK1 243 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 RAET1EQ8TD07 263 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 GFM1Q96RP9 751 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 MCCC1Q96RQ3 725 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 CNPPD1Q9BV87 410 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 FNDC11Q9BVV2 318 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 USP18Q9UMW8 372 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 ERBB4Q15303 1308 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms