RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 SDE2Q6IQ49 451 aa29.96■■■□□ 2.39
USP42-202ENST00000404008 ARHGAP36Q6ZRI8 547 aa29.96■■■□□ 2.39
USP42-202ENST00000404008 BBS12Q6ZW61 710 aa29.96■■■□□ 2.39
USP42-202ENST00000404008 SH2D3CQ8N5H7 860 aa29.96■■■□□ 2.39
USP42-202ENST00000404008 CARD9Q9H257 536 aa29.96■■■□□ 2.39
USP42-202ENST00000404008 HEY1Q9Y5J3 304 aa29.96■■■□□ 2.39
USP42-202ENST00000404008 ZSCAN5CA6NGD5 496 aaPredicted RBP29.95■■■□□ 2.39
USP42-202ENST00000404008 KCNK3O14649 394 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 PRAMEF11O60813 436 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 MAP3K6O95382 1288 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 CD160O95971 181 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 SRCP12931 536 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 TGM2P21980 687 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 GEMIN4P57678 1058 aaKnown RBP29.95■■■□□ 2.39
USP42-202ENST00000404008 SLC20A2Q08357 652 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 EOGTQ5NDL2 527 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 NPNTQ6UXI9 565 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 SYT13Q7L8C5 426 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 PDFQ9HBH1 243 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 C2orf42Q9NWW7 574 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 RAD54BQ9Y620 910 aa29.95■■■□□ 2.39
USP42-202ENST00000404008 J3KR12 359 aa29.94■■■□□ 2.38
USP42-202ENST00000404008 NNMTP40261 264 aa29.94■■■□□ 2.38
USP42-202ENST00000404008 SERPINH1P50454 418 aaKnown RBP29.94■■■□□ 2.38
USP42-202ENST00000404008 GNG11P61952 73 aa29.94■■■□□ 2.38
USP42-202ENST00000404008 MAMSTRQ6ZN01 415 aa29.94■■■□□ 2.38
USP42-202ENST00000404008 ATPAF2Q8N5M1 289 aa29.94■■■□□ 2.38
USP42-202ENST00000404008 ATP11CQ8NB49 1132 aa29.94■■■□□ 2.38
USP42-202ENST00000404008 IPO11Q9UI26 975 aaKnown RBP29.94■■■□□ 2.38
USP42-202ENST00000404008 ACTL7AQ9Y615 435 aa29.94■■■□□ 2.38
USP42-202ENST00000404008 TTC34A8MYJ7 566 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 K7ERQ8 282 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 ATP9BO43861 1147 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 HLA-EP13747 358 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 AVPR2P30518 371 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 GARSP41250 739 aaKnown RBP29.93■■■□□ 2.38
USP42-202ENST00000404008 NR2C2P49116 596 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 CLCN6P51797 869 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 IL10RBQ08334 325 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 SEL1L2Q5TEA6 688 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 LEKR1Q6ZMV7 388 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 LRRC49Q8IUZ0 686 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 ZNF366Q8N895 744 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 SP110Q9HB58 689 aa29.93■■■□□ 2.38
USP42-202ENST00000404008 POLR3BQ9NW08 1133 aaPredicted RBP29.93■■■□□ 2.38
USP42-202ENST00000404008 SMAD6O43541 496 aaKnown RBP29.92■■■□□ 2.38
USP42-202ENST00000404008 MAFKO60675 156 aa29.92■■■□□ 2.38
USP42-202ENST00000404008 TJP3O95049 919 aa29.92■■■□□ 2.38
USP42-202ENST00000404008 ATP1A1P05023 1023 aaKnown RBP29.92■■■□□ 2.38
USP42-202ENST00000404008 HOXB2P14652 356 aa29.92■■■□□ 2.38
USP42-202ENST00000404008 PECAM1P16284 738 aaPredicted RBP29.92■■■□□ 2.38
USP42-202ENST00000404008 MX2P20592 715 aa29.92■■■□□ 2.38
USP42-202ENST00000404008 FRS2Q8WU20 508 aa29.92■■■□□ 2.38
USP42-202ENST00000404008 OLFM3Q96PB7 478 aa29.92■■■□□ 2.38
USP42-202ENST00000404008 WDR24Q96S15 920 aa29.92■■■□□ 2.38
USP42-202ENST00000404008 SPATA6Q9NWH7 488 aaPredicted RBP29.92■■■□□ 2.38
USP42-202ENST00000404008 SAE1Q9UBE0 346 aaPredicted RBP29.92■■■□□ 2.38
USP42-202ENST00000404008 A0A1W2PQF6 199 aa29.91■■■□□ 2.38
USP42-202ENST00000404008 EPHX1P07099 455 aa29.91■■■□□ 2.38
USP42-202ENST00000404008 HNRNPA1L2Q32P51 320 aaKnown RBP29.91■■■□□ 2.38
USP42-202ENST00000404008 TMEM92Q6UXU6 159 aa29.91■■■□□ 2.38
USP42-202ENST00000404008 DTWD2Q8NBA8 298 aa29.91■■■□□ 2.38
USP42-202ENST00000404008 P3H4Q92791 437 aa29.91■■■□□ 2.38
USP42-202ENST00000404008 APOC4-APOC2K7ER74 178 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 APOC2P02655 101 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 KLF1Q13351 362 aaPredicted RBP29.9■■■□□ 2.38
USP42-202ENST00000404008 DLG2Q15700 870 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 CRY1Q16526 586 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 ACCSLQ4AC99 568 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 INO80DQ53TQ3 878 aaPredicted RBP29.9■■■□□ 2.38
USP42-202ENST00000404008 CASKIN2Q8WXE0 1202 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 HDAC11Q96DB2 347 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 TSGA13Q96PP4 275 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 CEP44Q9C0F1 390 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 MTG2Q9H4K7 406 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 CD248Q9HCU0 757 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 UBA2Q9UBT2 640 aaPredicted RBP29.9■■■□□ 2.38
USP42-202ENST00000404008 SUN2Q9UH99 717 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 SLC8A2Q9UPR5 921 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 COL9A1P20849 921 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 CXCR5P32302 372 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 CCR3P51677 355 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 SATB1Q01826 763 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 KIAA1211LQ6NV74 962 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 BZW1Q7L1Q6 419 aaKnown RBP29.9■■■□□ 2.38
USP42-202ENST00000404008 METTL3Q86U44 580 aaKnown RBP29.9■■■□□ 2.38
USP42-202ENST00000404008 HAUS1Q96CS2 278 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 ZNF599Q96NL3 588 aa29.9■■■□□ 2.38
USP42-202ENST00000404008 FCF1Q9Y324 198 aaKnown RBP29.9■■■□□ 2.38
USP42-202ENST00000404008 EDDM13A0A1B0GTR0 161 aa29.89■■■□□ 2.37
USP42-202ENST00000404008 ZNF821O75541 412 aaPredicted RBP29.89■■■□□ 2.37
USP42-202ENST00000404008 TMCC1O94876 653 aa29.89■■■□□ 2.37
USP42-202ENST00000404008 PEX11BO96011 259 aa29.89■■■□□ 2.37
USP42-202ENST00000404008 VAV1P15498 845 aa29.89■■■□□ 2.37
USP42-202ENST00000404008 CXCL12P48061 93 aa29.89■■■□□ 2.37
USP42-202ENST00000404008 DGKEP52429 567 aa29.89■■■□□ 2.37
USP42-202ENST00000404008 CAMK2GQ13555 558 aaPredicted RBP29.89■■■□□ 2.37
USP42-202ENST00000404008 STARD3Q14849 445 aa29.89■■■□□ 2.37
USP42-202ENST00000404008 PDK1Q15118 436 aa29.89■■■□□ 2.37
USP42-202ENST00000404008 CCDC181Q5TID7 509 aa29.89■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms