RNA–Protein interactions for RNA: ENST00000396548.5

TRIM39-204, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TRIM39, Length 3,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-204ENST00000396548 TSHRP16473 764 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 EIF3BP55884 814 aaKnown RBP12.97□□□□□ -0.33
TRIM39-204ENST00000396548 SLC10A7Q0GE19 358 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 ARHGAP15Q53QZ3 475 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 TNFAIP8L3Q5GJ75 292 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 DENND2CQ68D51 928 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 ALG1LQ6GMV1 187 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 ITPRIPL1Q6GPH6 555 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 ZBED8Q8IZ13 594 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 TNS4Q8IZW8 715 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 HJURPQ8NCD3 748 aaPredicted RBP12.97□□□□□ -0.33
TRIM39-204ENST00000396548 WFDC5Q8TCV5 224 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 TTC25Q96NG3 672 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 ZNF599Q96NL3 588 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 ACBD3Q9H3P7 528 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 TDP1Q9NUW8 608 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 LSM7Q9UK45 103 aaKnown RBP12.97□□□□□ -0.33
TRIM39-204ENST00000396548 CEP290O15078 2479 aa12.97□□□□□ -0.33
TRIM39-204ENST00000396548 F5H423 210 aaPredicted RBP12.96□□□□□ -0.33
TRIM39-204ENST00000396548 ZNF197O14709 1029 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 TBL1XO60907 577 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 ZMPSTE24O75844 475 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 ADRA1AP35348 466 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 ANO4Q32M45 955 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 FYB2Q5VWT5 728 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 PDIK1LQ8N165 341 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 FBXO36Q8NEA4 188 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 USP33Q8TEY7 942 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 ARL8AQ96BM9 186 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 CASS4Q9NQ75 786 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 DZANK1Q9NVP4 752 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 EURLQ9NYK6 297 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 C5orf42Q9H799 3197 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 ERI2A8K979 691 aaKnown RBP12.96□□□□□ -0.33
TRIM39-204ENST00000396548 LUC7L3O95232 432 aaKnown RBP12.96□□□□□ -0.33
TRIM39-204ENST00000396548 ACSL3O95573 720 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 GCAP28676 217 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 CCDC38Q502W7 563 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 HP1BP3Q5SSJ5 553 aaPredicted RBP12.96□□□□□ -0.33
TRIM39-204ENST00000396548 KIAA1958Q8N8K9 716 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 OR7D4Q8NG98 312 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 XAB2Q9HCS7 855 aaKnown RBP12.96□□□□□ -0.33
TRIM39-204ENST00000396548 RBM22Q9NW64 420 aaKnown RBP eCLIP12.96□□□□□ -0.33
TRIM39-204ENST00000396548 SH3BP1Q9Y3L3 701 aa12.96□□□□□ -0.33
TRIM39-204ENST00000396548 COL4A3Q01955 1670 aa12.96□□□□□ -0.34
TRIM39-204ENST00000396548 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.95□□□□□ -0.34
TRIM39-204ENST00000396548 GLDCP23378 1020 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 ELK3P41970 407 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 RENBPP51606 427 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 ZNF177Q13360 481 aaPredicted RBP12.95□□□□□ -0.34
TRIM39-204ENST00000396548 OLIG2Q13516 323 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 ELMSAN1Q6PJG2 1045 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 PRPF39Q86UA1 669 aaKnown RBP12.95□□□□□ -0.34
TRIM39-204ENST00000396548 ANKMY2Q8IV38 441 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 MPP5Q8N3R9 675 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 SMG7Q92540 1137 aaKnown RBP12.95□□□□□ -0.34
TRIM39-204ENST00000396548 LRRC39Q96DD0 335 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 TMA16Q96EY4 203 aaKnown RBP12.95□□□□□ -0.34
TRIM39-204ENST00000396548 IMP4Q96G21 291 aaKnown RBP12.95□□□□□ -0.34
TRIM39-204ENST00000396548 LRRC3BQ96PB8 259 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 CLEC4EQ9ULY5 219 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 MUSKO15146 869 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 LINC01565O15544 149 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 AVPR1AP37288 418 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 EFHBQ8N7U6 833 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 ARRDC2Q8TBH0 407 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 ATP13A1Q9HD20 1204 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 RHOCP08134 193 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 RGS19P49795 217 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 FAM193AP78312 1265 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 NIPAL4Q0D2K0 466 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 MTM1Q13496 603 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 LBRQ14739 615 aaKnown RBP12.95□□□□□ -0.34
TRIM39-204ENST00000396548 MPPE1Q53F39 396 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 DENND5AQ6IQ26 1287 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 SYCE2Q6PIF2 218 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 KDELC1Q6UW63 502 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 TMC5Q6UXY8 1006 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 GPR149Q86SP6 731 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 KRT222Q8N1A0 295 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 SPATA22Q8NHS9 363 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 RSPRY1Q96DX4 576 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 FEM1AQ9BSK4 669 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 SLC25A51Q9H1U9 297 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 RABGEF1Q9UJ41 708 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 ACTL7AQ9Y615 435 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.95□□□□□ -0.34
TRIM39-204ENST00000396548 MIA3Q5JRA6 1907 aa12.95□□□□□ -0.34
TRIM39-204ENST00000396548 SPDYE4A6NLX3 237 aa12.94□□□□□ -0.34
TRIM39-204ENST00000396548 PENKP01210 267 aaPredicted RBP12.94□□□□□ -0.34
TRIM39-204ENST00000396548 MMP13P45452 471 aa12.94□□□□□ -0.34
TRIM39-204ENST00000396548 ARF5P84085 180 aa12.94□□□□□ -0.34
TRIM39-204ENST00000396548 SPARCL1Q14515 664 aa12.94□□□□□ -0.34
TRIM39-204ENST00000396548 BBS9Q3SYG4 887 aa12.94□□□□□ -0.34
TRIM39-204ENST00000396548 CEP85LQ5SZL2 805 aa12.94□□□□□ -0.34
TRIM39-204ENST00000396548 MARC1Q5VT66 337 aa12.94□□□□□ -0.34
TRIM39-204ENST00000396548 RNF219Q5W0B1 726 aaPredicted RBP12.94□□□□□ -0.34
TRIM39-204ENST00000396548 TDRD5Q8NAT2 981 aaKnown RBP12.94□□□□□ -0.34
TRIM39-204ENST00000396548 NSMCE3Q96MG7 304 aa12.94□□□□□ -0.34
TRIM39-204ENST00000396548 ROPN1BQ9BZX4 212 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms