RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CPNE8Q86YQ8 564 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 STK40Q8N2I9 435 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 FAM71BQ8TC56 605 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 CEP44Q9C0F1 390 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 LRRC19Q9H756 370 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 PCDH18Q9HCL0 1135 aa22.18■■□□□ 1.14
CLN3-207ENST00000395653 RCOR3Q9P2K3 495 aaPredicted RBP22.18■■□□□ 1.14
CLN3-207ENST00000395653 NYNRINQ9P2P1 1898 aaKnown RBP22.18■■□□□ 1.14
CLN3-207ENST00000395653 A0A0A6YYK5 440 aaPredicted RBP22.17■■□□□ 1.14
CLN3-207ENST00000395653 ZSCAN5CA6NGD5 496 aaPredicted RBP22.17■■□□□ 1.14
CLN3-207ENST00000395653 TMEM110-MUSTN1A8MSY1 372 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 ALOX15BO15296 676 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 SMAD6O43541 496 aaKnown RBP22.17■■□□□ 1.14
CLN3-207ENST00000395653 KRT7P08729 469 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 CD6P30203 668 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 GSDMDP57764 484 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 TAS2R40P59535 323 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 CST6Q15828 149 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 C22orf39Q6P5X5 142 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 LPCAT2Q7L5N7 544 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 OR8D1Q8WZ84 308 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 TSC1Q92574 1164 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 HMCESQ96FZ2 354 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 CCDC114Q96M63 670 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 CSPG4P5Q96PW8 444 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 KLC2Q9H0B6 622 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 SPAG17Q6Q759 2223 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 WDR87Q6ZQQ6 2873 aa22.17■■□□□ 1.14
CLN3-207ENST00000395653 MCF2LO15068 1137 aa22.16■■□□□ 1.14
CLN3-207ENST00000395653 EPN2O95208 641 aa22.16■■□□□ 1.14
CLN3-207ENST00000395653 CD160O95971 181 aa22.16■■□□□ 1.14
CLN3-207ENST00000395653 ARSEP51690 589 aa22.16■■□□□ 1.14
CLN3-207ENST00000395653 CDH6P55285 790 aa22.16■■□□□ 1.14
CLN3-207ENST00000395653 RPL6Q02878 288 aaKnown RBP22.16■■□□□ 1.14
CLN3-207ENST00000395653 SFSWAPQ12872 951 aaKnown RBP22.16■■□□□ 1.14
CLN3-207ENST00000395653 SERINC3Q13530 473 aa22.16■■□□□ 1.14
CLN3-207ENST00000395653 KRT81Q14533 505 aa22.16■■□□□ 1.14
CLN3-207ENST00000395653 DSG4Q86SJ6 1040 aa22.16■■□□□ 1.14
CLN3-207ENST00000395653 ZNF354CQ86Y25 554 aa22.16■■□□□ 1.14
CLN3-207ENST00000395653 MMAAQ8IVH4 418 aaKnown RBP22.16■■□□□ 1.14
CLN3-207ENST00000395653 LZTR1Q8N653 840 aa22.16■■□□□ 1.14
CLN3-207ENST00000395653 WSB2Q9NYS7 404 aaPredicted RBP22.16■■□□□ 1.14
CLN3-207ENST00000395653 RIF1Q5UIP0 2472 aaKnown RBP22.16■■□□□ 1.14
CLN3-207ENST00000395653 FRYLO94915 3013 aa22.16■■□□□ 1.14
CLN3-207ENST00000395653 SLC1A1P43005 524 aa22.15■■□□□ 1.14
CLN3-207ENST00000395653 AFMIDQ63HM1 303 aa22.15■■□□□ 1.14
CLN3-207ENST00000395653 USP30Q70CQ3 517 aa22.15■■□□□ 1.14
CLN3-207ENST00000395653 PCDH20Q8N6Y1 951 aaKnown RBP22.15■■□□□ 1.14
CLN3-207ENST00000395653 CASKIN2Q8WXE0 1202 aa22.15■■□□□ 1.14
CLN3-207ENST00000395653 ISG20Q96AZ6 181 aaKnown RBP22.15■■□□□ 1.14
CLN3-207ENST00000395653 TOE1Q96GM8 510 aaKnown RBP22.15■■□□□ 1.14
CLN3-207ENST00000395653 HINFPQ9BQA5 517 aa22.15■■□□□ 1.14
CLN3-207ENST00000395653 PABPC3Q9H361 631 aaKnown RBP22.15■■□□□ 1.14
CLN3-207ENST00000395653 FARP1Q9Y4F1 1045 aaPredicted RBP22.15■■□□□ 1.14
CLN3-207ENST00000395653 PCDHGA5Q9Y5G8 931 aa22.15■■□□□ 1.14
CLN3-207ENST00000395653 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 ARHGAP42A6NI28 874 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 LRP3O75074 770 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 ZNF821O75541 412 aaPredicted RBP22.14■■□□□ 1.14
CLN3-207ENST00000395653 ADH1BP00325 375 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 GJC1P36383 396 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 NOP2P46087 812 aaKnown RBP22.14■■□□□ 1.14
CLN3-207ENST00000395653 PDK2Q15119 407 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 ATP13A4Q4VNC1 1196 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 TMEFF1Q8IYR6 380 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 NPWQ8N729 165 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 OR2A12Q8NGT7 310 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 CELF6Q96J87 481 aaKnown RBP22.14■■□□□ 1.14
CLN3-207ENST00000395653 ZNF670Q9BS34 389 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 SLC39A8Q9C0K1 460 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 REXO2Q9Y3B8 237 aaKnown RBP22.14■■□□□ 1.14
CLN3-207ENST00000395653 ZNF292O60281 2723 aa22.14■■□□□ 1.14
CLN3-207ENST00000395653 EP300Q09472 2414 aaPredicted RBP22.14■■□□□ 1.13
CLN3-207ENST00000395653 BNIP3LO60238 219 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 NDUFS2O75306 463 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 IL1BP01584 269 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 C5AR1P21730 350 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 AMPD1P23109 780 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 IL4RP24394 825 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 SLC8A1P32418 973 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 RECQLP46063 649 aaPredicted RBP22.14■■□□□ 1.13
CLN3-207ENST00000395653 PSMD8P48556 350 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 DPYSL3Q14195 570 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 INO80DQ53TQ3 878 aaPredicted RBP22.14■■□□□ 1.13
CLN3-207ENST00000395653 LRRC38Q5VT99 294 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 FAM46CQ5VWP2 391 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 TMCO3Q6UWJ1 677 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 MAP7D3Q8IWC1 876 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 ARHGAP12Q8IWW6 846 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 KCTD6Q8NC69 237 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 CALR3Q96L12 384 aaKnown RBP22.14■■□□□ 1.13
CLN3-207ENST00000395653 GRPEL1Q9HAV7 217 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 PPM1HQ9ULR3 514 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 TFR2Q9UP52 801 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 NCKAP1Q9Y2A7 1128 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 FCF1Q9Y324 198 aaKnown RBP22.14■■□□□ 1.13
CLN3-207ENST00000395653 ACTL7AQ9Y615 435 aa22.14■■□□□ 1.13
CLN3-207ENST00000395653 GVINP1Q7Z2Y8 2422 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 FAM186AA6NE01 2351 aa22.13■■□□□ 1.13
CLN3-207ENST00000395653 MID1O15344 667 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms