RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 FDPSP14324 419 aaKnown RBP13.59□□□□□ -0.23
USP49-203ENST00000394253 MAPK10P53779 464 aa13.59□□□□□ -0.23
USP49-203ENST00000394253 TRIM64CA6NLI5 447 aa13.59□□□□□ -0.23
USP49-203ENST00000394253 SRRM3A6NNA2 597 aaPredicted RBP13.59□□□□□ -0.23
USP49-203ENST00000394253 ERI2A8K979 691 aaKnown RBP13.59□□□□□ -0.23
USP49-203ENST00000394253 NCK1P16333 377 aa13.59□□□□□ -0.23
USP49-203ENST00000394253 TNNI3P19429 210 aa13.59□□□□□ -0.23
USP49-203ENST00000394253 CHRNA5P30532 468 aa13.59□□□□□ -0.23
USP49-203ENST00000394253 ATG9AQ7Z3C6 839 aa13.59□□□□□ -0.23
USP49-203ENST00000394253 ZNF607Q96SK3 696 aa13.59□□□□□ -0.23
USP49-203ENST00000394253 NEUROD4Q9HD90 331 aa13.59□□□□□ -0.23
USP49-203ENST00000394253 PCDHGC5Q9Y5F6 944 aa13.59□□□□□ -0.23
USP49-203ENST00000394253 FLT1P17948 1338 aa13.59□□□□□ -0.23
USP49-203ENST00000394253 TSPAN1O60635 241 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 MAFKO60675 156 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 BNIP2Q12982 314 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 PTPRNQ16849 979 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 FBXW8Q8N3Y1 598 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 CDRT15Q96T59 188 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 NFKBIZQ9BYH8 718 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 ANTXR1Q9H6X2 564 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 PMF1-BGLAPU3KQ54 211 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 SLC5A9Q2M3M2 681 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 GPR107Q5VW38 600 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 ASB12Q8WXK4 309 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 GRHL1Q9NZI5 618 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 TNPO3Q9Y5L0 923 aaKnown RBP13.58□□□□□ -0.23
USP49-203ENST00000394253 PLEKHG2Q9H7P9 1386 aa13.58□□□□□ -0.23
USP49-203ENST00000394253 CCDC88AQ3V6T2 1871 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 A0A087X1B8 175 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 S100A3P33764 101 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 PNPLA4P41247 253 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 NEDD1Q8NHV4 660 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 PIGKQ92643 395 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 ZNF354BQ96LW1 612 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 TEFMQ96QE5 360 aaKnown RBP13.58□□□□□ -0.24
USP49-203ENST00000394253 TBC1D13Q9NVG8 400 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 AFF2P51816 1311 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 C9P02748 559 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 GRIA3P42263 894 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 YTHDF3Q7Z739 585 aaKnown RBP13.58□□□□□ -0.24
USP49-203ENST00000394253 DHDDSQ86SQ9 333 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 TRIM74Q86UV6 250 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 TRIM73Q86UV7 250 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 PSMD13Q9UNM6 376 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 ALG6Q9Y672 507 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 CABIN1Q9Y6J0 2220 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 PTPN3P26045 913 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 RPL4P36578 427 aaKnown RBP13.58□□□□□ -0.24
USP49-203ENST00000394253 CDK8P49336 464 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 PDIA5Q14554 519 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 TTC7BQ86TV6 843 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 TMEM159Q96B96 161 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 TESCQ96BS2 214 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 C1QTNF7Q9BXJ2 289 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 DNTTP04053 509 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 ERCC2P18074 760 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 STARD3Q14849 445 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 INSCQ1MX18 579 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 C10orf120Q5SQS8 335 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 CHP1Q99653 195 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 CDADC1Q9BWV3 514 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 TAS2R13Q9NYV9 303 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 MID1O15344 667 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 ZNF14P17017 642 aaPredicted RBP13.58□□□□□ -0.24
USP49-203ENST00000394253 MTF1Q14872 753 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 ACTRT1Q8TDG2 376 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 TMEM165Q9HC07 324 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 GRAP2O75791 330 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 PROCP04070 461 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 ALDH5A1P51649 535 aaPredicted RBP13.58□□□□□ -0.24
USP49-203ENST00000394253 TCEAL6Q6IPX3 200 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 C11orf63Q6NUN7 778 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 OR5T3Q8NGG3 340 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 ZKSCAN4Q969J2 545 aaPredicted RBP13.58□□□□□ -0.24
USP49-203ENST00000394253 MID1IP1Q9NPA3 183 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 AP4E1Q9UPM8 1137 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 PCDHGB3Q9Y5G1 929 aa13.58□□□□□ -0.24
USP49-203ENST00000394253 RAD17O75943 681 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 BGNP21810 368 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 MCL1Q07820 350 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 SGCDQ92629 289 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.57□□□□□ -0.241e-6■■■■□ 26.1
USP49-203ENST00000394253 DCXO43602 365 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 TMEM253P0C7T8 217 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 PRLRP16471 622 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 NMT1P30419 496 aaKnown RBP13.57□□□□□ -0.24
USP49-203ENST00000394253 CDYL2Q8N8U2 506 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 MCOLN3Q8TDD5 553 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 F5H5T6 163 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 TEX33O43247 280 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 DGAT1O75907 488 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 TMEM51Q9NW97 253 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 PIN4Q9Y237 131 aaKnown RBP13.57□□□□□ -0.24
USP49-203ENST00000394253 ZNF451Q9Y4E5 1061 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 A0A1B0GVC2 190 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 KCNK1O00180 336 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 SPARCP09486 303 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 RGS19P49795 217 aa13.57□□□□□ -0.24
USP49-203ENST00000394253 MLLT6P55198 1093 aaPredicted RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms