RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 GLOD4Q9HC38 313 aa27.34■■□□□ 1.97
MSX1-201ENST00000382723 NT5MQ9NPB1 228 aa27.34■■□□□ 1.97
MSX1-201ENST00000382723 UBP1Q9NZI7 540 aa27.34■■□□□ 1.97
MSX1-201ENST00000382723 PLAAQ9Y263 795 aa27.34■■□□□ 1.97
MSX1-201ENST00000382723 GOLGA6BA6NDN3 693 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 MZF1P28698 734 aaPredicted RBP27.33■■□□□ 1.97
MSX1-201ENST00000382723 GRIA1P42261 906 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 SPARCL1Q14515 664 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 GRIN2CQ14957 1233 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 KYNUQ16719 465 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 FAM78AQ5JUQ0 283 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 TRMT10CQ7L0Y3 403 aaKnown RBP27.33■■□□□ 1.97
MSX1-201ENST00000382723 TMEM25Q86YD3 366 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 ANKMY2Q8IV38 441 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 ST13P5Q8NFI4 369 aaPredicted RBP27.33■■□□□ 1.97
MSX1-201ENST00000382723 FATE1Q969F0 183 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 ZIM3Q96PE6 472 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 CLEC4EQ9ULY5 219 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 ACTL7AQ9Y615 435 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 MYO9BQ13459 2157 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 CBX4O00257 560 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 KDELR3O43731 214 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 ACSL3O95573 720 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 MMP13P45452 471 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 LBRQ14739 615 aaKnown RBP27.33■■□□□ 1.97
MSX1-201ENST00000382723 CAND1Q86VP6 1230 aaKnown RBP27.33■■□□□ 1.97
MSX1-201ENST00000382723 CCDC117Q8IWD4 279 aaPredicted RBP27.33■■□□□ 1.97
MSX1-201ENST00000382723 UHMK1Q8TAS1 419 aaKnown RBP27.33■■□□□ 1.97
MSX1-201ENST00000382723 LRRC3BQ96PB8 259 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 PDFQ9HBH1 243 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 NINJ2Q9NZG7 142 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 CLEC1BQ9P126 229 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 TBC1D14Q9P2M4 693 aa27.33■■□□□ 1.97
MSX1-201ENST00000382723 PDE4DIPQ5VU43 2346 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 RIPK2O43353 540 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 TCF3P15923 654 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 CSKP41240 450 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 DLX2Q07687 328 aaPredicted RBP27.32■■□□□ 1.96
MSX1-201ENST00000382723 ITKQ08881 620 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 SLC29A2Q14542 456 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 PRPSAP1Q14558 356 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 MPP7Q5T2T1 576 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 FYB2Q5VWT5 728 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 ALS2CLQ60I27 953 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 DENND2CQ68D51 928 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 IQCKQ8N0W5 287 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 MCUQ8NE86 351 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 OR2W6PQ8NHA6 318 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 SPATA22Q8NHS9 363 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 RSPRY1Q96DX4 576 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 MLPHQ9BV36 600 aaPredicted RBP27.32■■□□□ 1.96
MSX1-201ENST00000382723 ACBD3Q9H3P7 528 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 EIF2B3Q9NR50 452 aaKnown RBP27.32■■□□□ 1.96
MSX1-201ENST00000382723 LMCD1Q9NZU5 365 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 C2orf16Q68DN1 1984 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 REV3LO60673 3130 aa27.32■■□□□ 1.96
MSX1-201ENST00000382723 HOXB8P17481 243 aaPredicted RBP27.31■■□□□ 1.96
MSX1-201ENST00000382723 MAXP61244 160 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 OLIG2Q13516 323 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 TMCO4Q5TGY1 634 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 ZNF783Q6ZMS7 281 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 OXNAD1Q96HP4 312 aaPredicted RBP27.31■■□□□ 1.96
MSX1-201ENST00000382723 FEM1AQ9BSK4 669 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 ACE2Q9BYF1 805 aaPredicted RBP27.31■■□□□ 1.96
MSX1-201ENST00000382723 KIF9Q9HAQ2 790 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 CLDND1Q9NY35 253 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 VPS28Q9UK41 221 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 COLQQ9Y215 455 aaPredicted RBP27.31■■□□□ 1.96
MSX1-201ENST00000382723 SARNPP82979 210 aaKnown RBP27.31■■□□□ 1.96
MSX1-201ENST00000382723 SPDYCQ5MJ68 293 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 ZNF534Q76KX8 674 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 RELL1Q8IUW5 271 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 ASB16Q96NS5 453 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 FRMD8Q9BZ67 464 aaPredicted RBP27.31■■□□□ 1.96
MSX1-201ENST00000382723 PIH1D1Q9NWS0 290 aaKnown RBP27.31■■□□□ 1.96
MSX1-201ENST00000382723 MTCH2Q9Y6C9 303 aa27.31■■□□□ 1.96
MSX1-201ENST00000382723 DYNC1LI1Q9Y6G9 523 aaKnown RBP27.31■■□□□ 1.96
MSX1-201ENST00000382723 NEDD8-MDP1E9PL57 170 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 ALOX15BO15296 676 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 TBX10O75333 385 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 TTC4O95801 387 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 CDK16Q00536 496 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 ATAT1Q5SQI0 421 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 TEX26Q8N6G2 289 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 SMARCD2Q92925 531 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 IRF7Q92985 503 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 FCRL5Q96RD9 977 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 RUFY1Q96T51 708 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 BBS2Q9BXC9 721 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 SPHK2Q9NRA0 654 aa27.3■■□□□ 1.96
MSX1-201ENST00000382723 UBA2Q9UBT2 640 aaPredicted RBP27.3■■□□□ 1.96
MSX1-201ENST00000382723 SNAP91O60641 907 aa27.29■■□□□ 1.96
MSX1-201ENST00000382723 USP12O75317 370 aa27.29■■□□□ 1.96
MSX1-201ENST00000382723 AP2A1O95782 977 aa27.29■■□□□ 1.96
MSX1-201ENST00000382723 MT-CYBP00156 380 aaPredicted RBP27.29■■□□□ 1.96
MSX1-201ENST00000382723 WEE1P30291 646 aa27.29■■□□□ 1.96
MSX1-201ENST00000382723 ZNF235Q14590 738 aa27.29■■□□□ 1.96
MSX1-201ENST00000382723 CES5AQ6NT32 575 aa27.29■■□□□ 1.96
MSX1-201ENST00000382723 ZNF599Q96NL3 588 aa27.29■■□□□ 1.96
MSX1-201ENST00000382723 GDE1Q9NZC3 331 aa27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms