RNA–Protein interactions for RNA: ENST00000378034.7

CKAP2-202, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CKAP2, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-202ENST00000378034 C9orf64Q5T6V5 341 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 ZNF354CQ86Y25 554 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 LRRC49Q8IUZ0 686 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 ARHGAP12Q8IWW6 846 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 PGBD3Q8N328 593 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 PCDH19Q8TAB3 1148 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 ATOH1Q92858 354 aaPredicted RBP13.52□□□□□ -0.25
CKAP2-202ENST00000378034 PTPRN2Q92932 1015 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 ISG20Q96AZ6 181 aaKnown RBP13.52□□□□□ -0.25
CKAP2-202ENST00000378034 MRGPRX1Q96LB2 322 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 CCDC114Q96M63 670 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 RNF157Q96PX1 679 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 GOLPH3Q9H4A6 298 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 KLHL11Q9NVR0 708 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 TRIM10Q9UDY6 481 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 PCDHA3Q9Y5H8 950 aa13.52□□□□□ -0.25
CKAP2-202ENST00000378034 C3orf70A6NLC5 250 aaPredicted RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 ALOX15BO15296 676 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 SIN3BO75182 1162 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 ZNF217O75362 1048 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 TNNT1P13805 278 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 ZFXP17010 805 aaPredicted RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 NDUFV2P19404 249 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 CTNNA2P26232 953 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 NUMBP49757 651 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 PAPOLAP51003 745 aaKnown RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 CCDC173Q0VFZ6 552 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 ELAVL3Q14576 367 aaKnown RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 USP39Q53GS9 565 aaKnown RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 HEATR6Q6AI08 1181 aaKnown RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 LINGO4Q6UY18 593 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 C11orf74Q86VG3 221 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 TMPRSS6Q8IU80 811 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 PLPP6Q8IY26 295 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 RCOR2Q8IZ40 523 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 PCDH20Q8N6Y1 951 aaKnown RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 NPWQ8N729 165 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 ZNF366Q8N895 744 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 EXD1Q8NHP7 514 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 PRCCQ92733 491 aaPredicted RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 RBM41Q96IZ5 413 aaKnown RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 CELF6Q96J87 481 aaKnown RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 MAK16Q9BXY0 300 aaKnown RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 RSPH9Q9H1X1 276 aaPredicted RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 SEMA4AQ9H3S1 761 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 ETNK2Q9NVF9 386 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 AMFRQ9UKV5 643 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 PPP2R2CQ9Y2T4 447 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 FARP1Q9Y4F1 1045 aaPredicted RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 NYNRINQ9P2P1 1898 aaKnown RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 NUP205Q92621 2012 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 A0A0U1RQJ8 604 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 MIF4GDA9UHW6 222 aaKnown RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 PRAMEF11O60813 436 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 PALMO75781 387 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 ZRANB2O95218 330 aaKnown RBP eCLIP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 CD160O95971 181 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 PXNP49023 591 aaPredicted RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 TAZQ16635 292 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 ZNF776Q68DI1 518 aaPredicted RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 C22orf39Q6P5X5 142 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 PEX26Q7Z412 305 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 DSG4Q86SJ6 1040 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 NT5DC3Q86UY8 548 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 SIPA1Q96FS4 1042 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 MKRN2Q9H000 416 aaKnown RBP13.51□□□□□ -0.25
CKAP2-202ENST00000378034 GUCA1BQ9UMX6 200 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 SCML1Q9UN30 329 aa13.51□□□□□ -0.25
CKAP2-202ENST00000378034 K7ERQ8 282 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 DFFAO00273 331 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 SMAD6O43541 496 aaKnown RBP13.5□□□□□ -0.25
CKAP2-202ENST00000378034 NBL1P41271 181 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 COPS2P61201 443 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 IL10RBQ08334 325 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 SFSWAPQ12872 951 aaKnown RBP13.5□□□□□ -0.25
CKAP2-202ENST00000378034 RFTN1Q14699 578 aaPredicted RBP13.5□□□□□ -0.25
CKAP2-202ENST00000378034 TMCO4Q5TGY1 634 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 NCBP2-AS2Q69YL0 99 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 PQLC3Q8N755 202 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.5□□□□□ -0.25
CKAP2-202ENST00000378034 GAB3Q8WWW8 586 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 OR8D1Q8WZ84 308 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 ZNF599Q96NL3 588 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 MTG2Q9H4K7 406 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 PDFQ9HBH1 243 aa13.5□□□□□ -0.25
CKAP2-202ENST00000378034 UBA2Q9UBT2 640 aaPredicted RBP13.5□□□□□ -0.25
CKAP2-202ENST00000378034 PLXND1Q9Y4D7 1925 aa13.49□□□□□ -0.25
CKAP2-202ENST00000378034 MCF2LO15068 1137 aa13.49□□□□□ -0.25
CKAP2-202ENST00000378034 ACADMP11310 421 aa13.49□□□□□ -0.25
CKAP2-202ENST00000378034 RECQLP46063 649 aaPredicted RBP13.49□□□□□ -0.25
CKAP2-202ENST00000378034 RPS14P62263 151 aaKnown RBP13.49□□□□□ -0.25
CKAP2-202ENST00000378034 TFDP2Q14188 446 aa13.49□□□□□ -0.25
CKAP2-202ENST00000378034 SLC9A4Q6AI14 798 aa13.49□□□□□ -0.25
CKAP2-202ENST00000378034 SPOCD1Q6ZMY3 1216 aa13.49□□□□□ -0.25
CKAP2-202ENST00000378034 UBL4BQ8N7F7 174 aa13.49□□□□□ -0.25
CKAP2-202ENST00000378034 RNF25Q96BH1 459 aaPredicted RBP13.49□□□□□ -0.25
CKAP2-202ENST00000378034 SPACA7Q96KW9 195 aa13.49□□□□□ -0.25
CKAP2-202ENST00000378034 FAM129BQ96TA1 746 aa13.49□□□□□ -0.25
CKAP2-202ENST00000378034 TPSD1Q9BZJ3 242 aa13.49□□□□□ -0.25
CKAP2-202ENST00000378034 SP110Q9HB58 689 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms